PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017285-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 294aa MW: 33380.2 Da PI: 4.8055

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017285-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.2	1.7e-21	24	113	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt++e+l+Li+a++e++ +l+rg+lk +Weev+ + + ++ ++s+ qC++k+e+l++r + +k++ + sss++pyf+ + WALNUT_00017285-RA 24 WTHEETLHLIQAYQEKWYSLKRGQLKSSQWEEVAVTVaarcgydHTEPSSKSALQCRHKMEKLRQRLRSEKQRLPT--PSSSSSWPYFHLM 112 ***********************************99999999**************************7..788889***99 PP trihelix 86 e 86 + WALNUT_00017285-RA 113 D 113 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.9E-19	23	115	No hit	No description
PROSITE profile	PS50090	6.075	23	87	IPR017877	Myb-like domain
SMART	SM00595	3.8E-5	31	120	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAGPGPSPSP SPNTASKKPQ PLPWTHEETL HLIQAYQEKW YSLKRGQLKS SQWEEVAVTV 60 AARCGYDHTE PSSKSALQCR HKMEKLRQRL RSEKQRLPTP SSSSSWPYFH LMDSLDRGPL 120 PPISALPISL VPPPHDESDY DDDNDVKEEG GFDEEDYDCH GRSRSIDYIL RRPTIVNRFA 180 AIGGDGDATG KRSGASGIFG DPVAKRRREE LVGNDDDPEE EEEEEEEEGR GLVSELAAEI 240 RAFAERFIGM ENMKMKMMKD AERFRMEMEN KRMELILESQ QRIVDSIERT FGSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018818022.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A2I4EF55	0.0	A0A2I4EF55_JUGRE; trihelix transcription factor ASIL1
STRING	XP_009372525.1	1e-89	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10087	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-46	Trihelix family protein