PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

WALNUT_00017266-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 768aa MW: 86777.5 Da PI: 7.3173

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017266-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.7	3.7e-116	395	766	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL++cA+ v+sgd++ a++lL+++++++sp gd +qRl +yf++AL+ rla++ + +y l ++ ts ++ l+a+++++ ++P+ ++ WALNUT_00017266-RA 395 TLLTQCAHTVASGDQRTANELLKQIRQHSSPFGDGTQRLSHYFANALEVRLAGTRTPVYTPLVSNGTS---AADILKAYQVYVTACPFKRM 482 69*******************************************************999999888...9*************** PP GRAS 94 shltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 s++ aN++I + v ++ +rvHiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL++++++++vpfe++v WALNUT_00017266-RA 483 SNFFANRTIRKLVLSQkaTRVHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGfrPAERVEETGRRLENYCKRFNVPFEYSV 573 ******998766569**************************************9************************9 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e+++le+L+++++E ++Vn+ ++l +l+de+++++s+rd+vL+l+k+++P+++v+ + +n++ F++rf eal ++sa+fd++ WALNUT_00017266-RA 574 -IAQKWETIQLEDLKIDRDELVIVNCLYRLRNLPDETLAINSPRDTVLNLIKRINPDLFVHGVVNGTYNAPFFATRFREALFHFSAFFDMF 663 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 +a+++re+e+r + E+e++gr+++nv+aceg er+er et+++W+ r +aG++++pl++++ + +k+ ++ + + + v+ + +++++gW WALNUT_00017266-RA 664 DANVAREDEQRFMFEKEIFGRDAMNVIACEGLERVERPETYKQWQVRNLRAGLRQLPLDQDVLQRVKRTVKSEYHKDFVVDVDGHWMLQGW 754 ********************************************************************99888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r ++++S+Wr WALNUT_00017266-RA 755 KGRVIYALSCWR 766 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.335	367	746	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-113	395	766	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
MHHDSAIGQR RIYFFWDEKG QPNIFITIVK KSCVHILHKL GQMSCGSRYT ISLPSVQHDD 60 LFHLAPTYLR FPGSMNGFIF SRGSVPLRLN ENLVNGLKVN HGFVDPPFLS TDPPHHPSDS 120 SPSSGTSSEG DSPDSGDFPN VFFKYLNEML MEEDLETKPC MLQDCLALQA AEKSFYEALV 180 QESPPSSIQR PPGFEQRPDD SFAGGSSVDS SNSHAADNSV ESKWESESSC VQSHRPVALG 240 EIEPIRTARG GRTIKSLTNG NRETFDLEST RSAPAEQTRD VAAMAEKNRR NPSPNGSREK 300 KNHHREDSQD YLEEGRSNKQ SAVYAGDSES LEMYDDVLLC RGVGDESSSC GLPESTGNGG 360 SRRFQHGGNR SSGENSKTTR SKKQGNKGEV VDLWTLLTQC AHTVASGDQR TANELLKQIR 420 QHSSPFGDGT QRLSHYFANA LEVRLAGTRT PVYTPLVSNG TSAADILKAY QVYVTACPFK 480 RMSNFFANRT IRKLVLSQKA TRVHIIDFGI LYGFQWPCLI QRLSERPGGP PKLRITGIEL 540 PQPGFRPAER VEETGRRLEN YCKRFNVPFE YSVIAQKWET IQLEDLKIDR DELVIVNCLY 600 RLRNLPDETL AINSPRDTVL NLIKRINPDL FVHGVVNGTY NAPFFATRFR EALFHFSAFF 660 DMFDANVARE DEQRFMFEKE IFGRDAMNVI ACEGLERVER PETYKQWQVR NLRAGLRQLP 720 LDQDVLQRVK RTVKSEYHKD FVVDVDGHWM LQGWKGRVIY ALSCWRPA

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

MHHDSAIGQR RIYFFWDEKG QPNIFITIVK KSCVHILHKL GQMSCGSRYT ISLPSVQHDD  60
LFHLAPTYLR FPGSMNGFIF SRGSVPLRLN ENLVNGLKVN HGFVDPPFLS TDPPHHPSDS  120
SPSSGTSSEG DSPDSGDFPN VFFKYLNEML MEEDLETKPC MLQDCLALQA AEKSFYEALV  180
QESPPSSIQR PPGFEQRPDD SFAGGSSVDS SNSHAADNSV ESKWESESSC VQSHRPVALG  240
EIEPIRTARG GRTIKSLTNG NRETFDLEST RSAPAEQTRD VAAMAEKNRR NPSPNGSREK  300
KNHHREDSQD YLEEGRSNKQ SAVYAGDSES LEMYDDVLLC RGVGDESSSC GLPESTGNGG  360
SRRFQHGGNR SSGENSKTTR SKKQGNKGEV VDLWTLLTQC AHTVASGDQR TANELLKQIR  420
QHSSPFGDGT QRLSHYFANA LEVRLAGTRT PVYTPLVSNG TSAADILKAY QVYVTACPFK  480
RMSNFFANRT IRKLVLSQKA TRVHIIDFGI LYGFQWPCLI QRLSERPGGP PKLRITGIEL  540
PQPGFRPAER VEETGRRLEN YCKRFNVPFE YSVIAQKWET IQLEDLKIDR DELVIVNCLY  600
RLRNLPDETL AINSPRDTVL NLIKRINPDL FVHGVVNGTY NAPFFATRFR EALFHFSAFF  660
DMFDANVARE DEQRFMFEKE IFGRDAMNVI ACEGLERVER PETYKQWQVR NLRAGLRQLP  720
LDQDVLQRVK RTVKSEYHKD FVVDVDGHWM LQGWKGRVIY ALSCWRPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-47	399	767	25	380	Protein SCARECROW
5b3h_A	5e-47	399	767	24	379	Protein SCARECROW
5b3h_D	5e-47	399	767	24	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850465.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2I4H2T3	0.0	A0A2I4H2T3_JUGRE; scarecrow-like protein 14
STRING	XP_002533749.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein