PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017149-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 392aa    MW: 44655.7 Da    PI: 6.3971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017149-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-14196247155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  WALNUT_00017149-RA 196 QRMTHIAVERNRRRQMNDHLNVLRSLMPTP---YIQRGDQASIIGGAIDFVKELE 247
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16187259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-12194251No hitNo description
PROSITE profilePS5088815.758195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-14196261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MRFFGEHSEA DCLEQEFVLT DSLKFEEQEP HFSTPMLEEK MPFLQMLQSV GSPHFLPYKE  60
PNFQTLLRLQ HRKKPWDGYT YNIPEMETQI QALELESCVT HDIVELHSPV KSVTMDLRQP  120
HSASCLEATV SSECNQEPNH CIELGASAGS PPPWPNPPPQ SWPKQTYLPK SLPLARERRK  180
RKRTRPTKNQ EEVESQRMTH IAVERNRRRQ MNDHLNVLRS LMPTPYIQRG DQASIIGGAI  240
DFVKELEQLL HSLEAQKRMR KNQEGVEGSG AMDAPSNGLF MSPQCRNAST EEGHRGEEVK  300
SDNKSEDAEI QVTVIQTHVN MKIQCQRKPG QLLKAIVALE ELRLTVLHLN ITSSEASILY  360
SLSLKIEDEC KLGSANEIAS AVQQIWSFIS RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RRKRKR
2196207RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894303e-74KP689430.1 Prunus pseudocerasus isolate Unigene20562 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808973.10.0PREDICTED: transcription factor bHLH67-like
TrEMBLA0A2I4DP980.0A0A2I4DP98_JUGRE; transcription factor bHLH67-like
STRINGEMJ192391e-153(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.16e-81bHLH family protein