PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017135-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 685aa MW: 76244.9 Da PI: 6.3047

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017135-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	419.5	2.9e-128	303	669	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv+lL++c+ea+ ++ +++++++a+l elasp+g+p+ Rl ay+teALa r++r +++++++ +p+e + + +++ +al+lf++vsPi+ WALNUT_00017135-RA 303 LVSLLTACVEAIGFRNIAMINHFIAKLGELASPKGSPISRLSAYYTEALAIRVTRLWPHIFHINTPRELD-RVDDDSGTALSLFNQVSPIP 392 6899********************************************************99999998.5677888999****** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 kf h+t N+ +l+ +eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el+etg+rLa fAe+l++pfef++ v WALNUT_00017135-RA 393 KFLHFTSNEILLRTFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTSPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-V 478 ******************************************************....***********************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 ++rled++l++L+vk++E++aVn+++q+h++l++ ++ + +++L l++s++P++v+++eqea+hn++++ +r++++l++ysa+fds+ WALNUT_00017135-RA 479 VDRLEDVRLWMLHVKEQECVAVNCIFQMHKTLSD-GNGG-ALRDFLGLIRSTNPTIVIMAEQEAEHNDPRLEARVSNSLKHYSAIFDSIGY 567 ****************************43.3333.4689******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlg 361 +lp +s+ r k+E++ ++rei+n++aceg++r erhe++ekWr+ +e+ GF+ + +se+++ q ++ll++++ + ++v+++ l+l WALNUT_00017135-RA 568 SLPLDSSVRLKIEEM-FAREIRNIIACEGRDRLERHESFEKWRKLIEQGGFRCMGISEREMLQSQMLLKMYSCENFSVKKQgqdGVGLTLS 657 ***********.****************************************************9996644255677 PP GRAS 362 WkdrpLvsvSaW 373 W d+pL+++SaW WALNUT_00017135-RA 658 WLDQPLYTISAW 669 ************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.649	277	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-125	303	669	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE APAPLQACHF QLPSMSTQRL DLPCSFSRKD TSRSQTIRPV 60 GLSVEKPIES KTGSCSLKQS IRLPPLSTST STSAQTTFTD AKREIKNEFW GQGKSLKRLA 120 ERGSVDESCI SRAKRKKRGS DNGKSDDIRG GGRDNLSLGQ LGAGNFWFQP SLEASRSVPG 180 IIGLSPPHVP FSLTYSEEEE RICYVPGEVI SPPLPLSNNP WVESIVTEIT DLGEKDGETS 240 HGLVKEASGS SSSSDSQSLG LRLNENVSEQ EVGNGSRNPY SHEEHEVETR EEDNRGEHQG 300 FELVSLLTAC VEAIGFRNIA MINHFIAKLG ELASPKGSPI SRLSAYYTEA LAIRVTRLWP 360 HIFHINTPRE LDRVDDDSGT ALSLFNQVSP IPKFLHFTSN EILLRTFEGK DRVHIIDFDI 420 KQGLQWPSLF QSLASRTSPP SHVRITGIGE SKQELNETGD RLAGFAEALN LPFEFHPVVD 480 RLEDVRLWML HVKEQECVAV NCIFQMHKTL SDGNGGALRD FLGLIRSTNP TIVIMAEQEA 540 EHNDPRLEAR VSNSLKHYSA IFDSIGYSLP LDSSVRLKIE EMFAREIRNI IACEGRDRLE 600 RHESFEKWRK LIEQGGFRCM GISEREMLQS QMLLKMYSCE NFSVKKQGQD GVGLTLSWLD 660 QPLYTISAWA PLDITGSSSS YSQPS

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE APAPLQACHF QLPSMSTQRL DLPCSFSRKD TSRSQTIRPV  60
GLSVEKPIES KTGSCSLKQS IRLPPLSTST STSAQTTFTD AKREIKNEFW GQGKSLKRLA  120
ERGSVDESCI SRAKRKKRGS DNGKSDDIRG GGRDNLSLGQ LGAGNFWFQP SLEASRSVPG  180
IIGLSPPHVP FSLTYSEEEE RICYVPGEVI SPPLPLSNNP WVESIVTEIT DLGEKDGETS  240
HGLVKEASGS SSSSDSQSLG LRLNENVSEQ EVGNGSRNPY SHEEHEVETR EEDNRGEHQG  300
FELVSLLTAC VEAIGFRNIA MINHFIAKLG ELASPKGSPI SRLSAYYTEA LAIRVTRLWP  360
HIFHINTPRE LDRVDDDSGT ALSLFNQVSP IPKFLHFTSN EILLRTFEGK DRVHIIDFDI  420
KQGLQWPSLF QSLASRTSPP SHVRITGIGE SKQELNETGD RLAGFAEALN LPFEFHPVVD  480
RLEDVRLWML HVKEQECVAV NCIFQMHKTL SDGNGGALRD FLGLIRSTNP TIVIMAEQEA  540
EHNDPRLEAR VSNSLKHYSA IFDSIGYSLP LDSSVRLKIE EMFAREIRNI IACEGRDRLE  600
RHESFEKWRK LIEQGGFRCM GISEREMLQS QMLLKMYSCE NFSVKKQGQD GVGLTLSWLD  660
QPLYTISAWA PLDITGSSSS YSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-67	310	671	25	379	Protein SCARECROW
5b3h_D	6e-67	310	671	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811904.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A2I4DXL9	0.0	A0A2I4DXL9_JUGRE; scarecrow-like protein 28
STRING	EOY24632	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein