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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017100-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Trihelix | ||||||||
Protein Properties | Length: 674aa MW: 76141.8 Da PI: 6.7832 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.3 | 2.7e-15 | 116 | 171 | 2 | 62 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkryk 62 Wt++ev aL+++r++me+++ + We+vs+k++e gf+rs+ +Ckek+e+ ++++ WALNUT_00017100-RA 116 WTNEEVIALLRIRSSMENWFPEF-----TWEHVSRKLAELGFKRSAAKCKEKFEEESRYFN 171 ********************998.....9****************************9997 PP | |||||||
2 | trihelix | 97.8 | 9.6e-31 | 512 | 598 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ +++++++ +k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql WALNUT_00017100-RA 512 RWPRDEVLALINLRCSLYNNVEDKElgAKGPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 598 8*********************9865599*******************************************8.9999********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 20 | 112 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 5.3E-10 | 114 | 183 | No hit | No description |
PROSITE profile | PS50090 | 6.319 | 116 | 167 | IPR017877 | Myb-like domain |
CDD | cd12203 | 4.13E-14 | 116 | 171 | No hit | No description |
SMART | SM00717 | 0.15 | 509 | 573 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.31E-26 | 511 | 578 | No hit | No description |
Pfam | PF13837 | 5.2E-19 | 511 | 598 | No hit | No description |
PROSITE profile | PS50090 | 6.586 | 512 | 571 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 674 aa Download sequence Send to blast |
MFDGVPDQFH HFIASSRTTL PLPLSFPLHA AAAAAASNPS QNITFPPYDH YEPPPPNSHH 60 HQAALALHPN LLQPLHHQSP THKDHEEKEE NNLVSVNLDI ERERSIQVQQ PIDPAWTNEE 120 VIALLRIRSS MENWFPEFTW EHVSRKLAEL GFKRSAAKCK EKFEEESRYF NSNINYGKSY 180 RFFSEPEELY HGNQNPDDHV GTEKNGQKME KPSHDQGSQE DHNLGQSLEA DHSREGDHSR 240 DGTVGEHFKD IGTETVAGKA KRKKRKRKKF EMLKGLCEKI VSKMMAQQEE MHHKLLEDLA 300 KRDEEKVAKE EAWKKQEMDR MNRELEIMSH EQAIAGDRQA TIIEFLKQIA SSSFGSQYFN 360 EERHDIQADS LKVTKSSNSY PPSTNSSSLI QAPNPNPASD INNQNTVEAP QLSFAMDHQG 420 HHNFSSLSTK GNSITPTSIT KTLARHQNPS LNTLAPNTPE VPTSTSPTLP LSSQNRNSPN 480 TQNMPLTPIS TSTHKDSPNS IANIVKDDLG KRWPRDEVLA LINLRCSLYN NVEDKELGAK 540 GPLWERISQG MLELGYKRSA KRCKEKWENI NKYFRKTKDV NKKRSLDSRT CPYFHQLSTL 600 YNQGTLVIAP SEGPENHLIS SSTTTAPENH LPLPDIGLNN SSQGMSSGLN STLLQVAEGE 660 KNMVQAQSFD FELI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 260 | 268 | KRKKRKRKK |
2 | 261 | 266 | RKKRKR |
3 | 262 | 267 | KKRKRK |
4 | 262 | 268 | KKRKRKK |
5 | 264 | 268 | RKRKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840013.1 | 0.0 | PREDICTED: trihelix transcription factor GTL2-like | ||||
TrEMBL | A0A2I4G7Y1 | 0.0 | A0A2I4G7Y1_JUGRE; trihelix transcription factor GTL2-like | ||||
STRING | POPTR_0013s03670.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 4e-43 | Trihelix family protein |