PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ERF

Protein Properties

Length: 364aa MW: 41045.7 Da PI: 5.0231

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016728-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.5	9e-20	122	171	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp+ r r +lg+++taeeAa +++a+ kl+g WALNUT_00016728-RA 122 KFRGVRQRP-WGKWAAEIRDPV----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 171 89*****.******63....45***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.0E-29	121	179	IPR001471	AP2/ERF domain
CDD	cd00018	3.49E-33	122	178	No hit	No description
SMART	SM00380	9.2E-39	122	185	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.35E-21	122	179	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.406	122	179	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-12	122	171	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-10	123	134	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-10	145	161	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDQDQGILCP VKFTEHRNVT KKLTKPGHVV SDGHRKRQAV DPNAPRVVRI SVTDPDATDS 60 SSDEEDEVVF FFGRQRVKRY VNEINIESGC KTNAISKARK RPAGGSPTCR RPPKIAPTNG 120 RKFRGVRQRP WGKWAAEIRD PVRRVRLWLG TYDTAEEAAM VYDNAAIKLR GPDASTNFVT 180 PPPPKEMPEV NVPSVSCDDS SDESLSHSHS LSSPTSVLHR YIAHSCSEEV QPTKQEKEQE 240 PEQQQQQQQQ ESIKKPVGKC KREKLDGEEV FRECQAEMSL SDDPGIADYL QLEFPSCYED 300 LFNYSEPSLL FEDPMPRDIP MDDFGLLFGD NRNESYGSSS MVNPNQGDDY FQDILLSSDP 360 LVVL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDQDQGILCP VKFTEHRNVT KKLTKPGHVV SDGHRKRQAV DPNAPRVVRI SVTDPDATDS  60
SSDEEDEVVF FFGRQRVKRY VNEINIESGC KTNAISKARK RPAGGSPTCR RPPKIAPTNG  120
RKFRGVRQRP WGKWAAEIRD PVRRVRLWLG TYDTAEEAAM VYDNAAIKLR GPDASTNFVT  180
PPPPKEMPEV NVPSVSCDDS SDESLSHSHS LSSPTSVLHR YIAHSCSEEV QPTKQEKEQE  240
PEQQQQQQQQ ESIKKPVGKC KREKLDGEEV FRECQAEMSL SDDPGIADYL QLEFPSCYED  300
LFNYSEPSLL FEDPMPRDIP MDDFGLLFGD NRNESYGSSS MVNPNQGDDY FQDILLSSDP  360
LVVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	8e-20	120	178	3	62	ATERF1
3gcc_A	8e-20	120	178	3	62	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852072.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF4-like
Swissprot	Q9SUE3	5e-60	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A2I4H7E3	0.0	A0A2I4H7E3_JUGRE; ethylene-responsive transcription factor CRF4-like
STRING	XP_010097869.1	1e-101	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF450	34	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	5e-47	cytokinin response factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]