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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016728-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 364aa MW: 41045.7 Da PI: 5.0231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9e-20 | 122 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp+ r r +lg+++taeeAa +++a+ kl+g WALNUT_00016728-RA 122 KFRGVRQRP-WGKWAAEIRDPV----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 171 89*******.**********63....45*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 121 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-33 | 122 | 178 | No hit | No description |
SMART | SM00380 | 9.2E-39 | 122 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-21 | 122 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.406 | 122 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 122 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MDQDQGILCP VKFTEHRNVT KKLTKPGHVV SDGHRKRQAV DPNAPRVVRI SVTDPDATDS 60 SSDEEDEVVF FFGRQRVKRY VNEINIESGC KTNAISKARK RPAGGSPTCR RPPKIAPTNG 120 RKFRGVRQRP WGKWAAEIRD PVRRVRLWLG TYDTAEEAAM VYDNAAIKLR GPDASTNFVT 180 PPPPKEMPEV NVPSVSCDDS SDESLSHSHS LSSPTSVLHR YIAHSCSEEV QPTKQEKEQE 240 PEQQQQQQQQ ESIKKPVGKC KREKLDGEEV FRECQAEMSL SDDPGIADYL QLEFPSCYED 300 LFNYSEPSLL FEDPMPRDIP MDDFGLLFGD NRNESYGSSS MVNPNQGDDY FQDILLSSDP 360 LVVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-20 | 120 | 178 | 3 | 62 | ATERF1 |
3gcc_A | 8e-20 | 120 | 178 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852072.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Swissprot | Q9SUE3 | 5e-60 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A2I4H7E3 | 0.0 | A0A2I4H7E3_JUGRE; ethylene-responsive transcription factor CRF4-like | ||||
STRING | XP_010097869.1 | 1e-101 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-47 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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