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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016643-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HSF | ||||||||
Protein Properties | Length: 332aa MW: 37524.7 Da PI: 5.5143 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.3 | 1.2e-33 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F++k++++++d++++ li+w + +nsf+vld+ +f++k+Lp yFkhsnf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k WALNUT_00016643-RA 10 FVMKTFHMVNDPTTDILITWGRANNSFIVLDPLDFSRKILPAYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKL 91 9********************999*****************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i rkk+ WALNUT_00016643-RA 92 LLRNIVRKKH 101 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.3E-50 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.5E-35 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.72E-31 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.1E-28 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-17 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-17 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-17 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MELNNIVAPF VMKTFHMVND PTTDILITWG RANNSFIVLD PLDFSRKILP AYFKHSNFSS 60 FVRQLNTYGF RKVDPDRWEF ANEWFLRGQK LLLRNIVRKK HGRINSYTQV KHEELDEEEL 120 VMEIARLKEE QTAMDEELRG MNKRLEATEK RPEQMMVFLR KVFAEDPDIL PRMMLQKERT 180 RRIMSSEKKR RLIIPASSPS SSIKTEDEDE EGSQVLISSS PETGFEIGNL REQSSPETPT 240 VLGWLSQRHE VIMGQSPTAQ EPFGCVSIDS PFITASPATT GIGNSPALSP PESSISGYGN 300 GSSSVVSFFT EMVAGSPPPP YPFSLLGGGF QL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-24 | 7 | 99 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 7 | 99 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 7 | 99 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018838842.1 | 0.0 | PREDICTED: heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 6e-86 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A2I4G4K8 | 0.0 | A0A2I4G4K8_JUGRE; heat stress transcription factor C-1-like | ||||
STRING | EOY30804 | 1e-123 | (Theobroma cacao) | ||||
STRING | cassava4.1_010201m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8367 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 5e-81 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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