PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016630-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 360aa MW: 42169.3 Da PI: 4.4706

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016630-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.4	1.9e-13	117	202	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W ++ v +L+e+ ++ +l+r++l+ +W +v++k++e + er+ +qC+ +++l+++ykk+k+ + +ss+++yf++++ WALNUT_00016630-RA 117 EWNEHAVFVLLEVWGDRFLQLGRKSLRSEDWNDVAEKVSEvSKTERTEVQCRAMMDKLKRKYKKEKAKVDEM-GSNSSKWVYFKKMD 202 5***********************************772577********************9997.556669*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-19	116	204	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGDMENDARY SSKSYALNPY NPSHRPRNLI PSSNYTHPIR NNYEVEDDDE FDVDNDRQED 60 EEEEEDENPN GYCRNLEADG DFNRHPKKRK LRNSISGYES VARSAKDSYS AWIPEAEWNE 120 HAVFVLLEVW GDRFLQLGRK SLRSEDWNDV AEKVSEVSKT ERTEVQCRAM MDKLKRKYKK 180 EKAKVDEMGS NSSKWVYFKK MDMLMASSPR QDFGLACGVD SGEYVFMNTW VYLDRSNGFD 240 EMRDSPGESE NEEEDGIESD EPPRRTRARG RGEGSSSYRV VADSIQKFGD IYEKIESGKR 300 QHMMELEKMR LEFQRELELQ KKQILERAQT EIAKMQEEDD DEDSDSSEEN LKMMELEKSL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGDMENDARY SSKSYALNPY NPSHRPRNLI PSSNYTHPIR NNYEVEDDDE FDVDNDRQED  60
EEEEEDENPN GYCRNLEADG DFNRHPKKRK LRNSISGYES VARSAKDSYS AWIPEAEWNE  120
HAVFVLLEVW GDRFLQLGRK SLRSEDWNDV AEKVSEVSKT ERTEVQCRAM MDKLKRKYKK  180
EKAKVDEMGS NSSKWVYFKK MDMLMASSPR QDFGLACGVD SGEYVFMNTW VYLDRSNGFD  240
EMRDSPGESE NEEEDGIESD EPPRRTRARG RGEGSSSYRV VADSIQKFGD IYEKIESGKR  300
QHMMELEKMR LEFQRELELQ KKQILERAQT EIAKMQEEDD DEDSDSSEEN LKMMELEKSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018838829.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBL	A0A2I4G4K1	0.0	A0A2I4G4K1_JUGRE; trihelix transcription factor ASIL2 isoform X1
STRING	XP_009352475.1	1e-132	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-80	Trihelix family protein