PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016513-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HSF

Protein Properties

Length: 336aa MW: 38002.7 Da PI: 5.3206

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016513-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.8	5.3e-36	16	108	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F++k+y++++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ WALNUT_00016513-RA 16 FVMKTYQMINDPKTDSLITWGRANNSFIVIDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKH 97 9******************999*************************************999.........********** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i r++++ WALNUT_00016513-RA 98 LLRNIVRRRQS 108 ****99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.4E-53	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.3E-37	13	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.13E-33	13	105	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.9E-18	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.3E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-18	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.9E-18	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MLAVNGMEAN NVIAPFVMKT YQMINDPKTD SLITWGRANN SFIVIDPLDF SQRILPAYFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFANEW FLRGQKHLLR NIVRRRQSRN SNTQGLKHED 120 VDDEEELVME IARLKEEQKA LDEELRGMNR RLEATERRPE QMMAFLHKVV EDPDIIPRLM 180 LQKERTRRLM SEKKRRLMIP SASSSSSIKT EDEEEGTTQG VNSSSPETGF EIDNFREQSS 240 PDNPTPGWFI QRQVMGSYSI AQEPFGCIAI DSPFLSAPTA TTTGIGNSTA VSPPESNMSG 300 YGNGSSGQVS LFTEMAAGGE ASPPPPYPFS LFRGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	7e-25	13	108	17	123	Heat shock factor protein 1
5d5u_B	7e-25	13	105	26	129	Heat shock factor protein 1
5d5v_B	7e-25	13	105	26	129	Heat shock factor protein 1
5d5v_D	7e-25	13	105	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018805575.1	0.0	PREDICTED: heat stress transcription factor C-1-like
Swissprot	Q9LV52	1e-97	HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBL	A0A2I4DEK3	0.0	A0A2I4DEK3_JUGRE; heat stress transcription factor C-1-like
STRING	cassava4.1_010201m	1e-132	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8367	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	1e-94	heat shock transcription factor C1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771]