PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00016305-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Nin-like

Protein Properties

Length: 870aa MW: 96388.7 Da PI: 6.321

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00016305-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.9	5.4e-30	557	608	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le+l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ WALNUT_00016305-RA 557 AEKNITLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 608 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.916	547	628	IPR003035	RWP-RK domain
Pfam	PF02042	7.9E-26	560	608	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.41E-24	764	858	No hit	No description
SMART	SM00666	1.6E-26	773	856	IPR000270	PB1 domain
PROSITE profile	PS51745	25.174	773	856	IPR000270	PB1 domain
CDD	cd06407	3.74E-41	775	854	No hit	No description
Pfam	PF00564	5.8E-18	775	855	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.4E-23	775	853	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MEDGVLSPGT MLDALPDSGM DLDFMDNIFF DGFWLEATDG SEFLHHSPSS SGALLVPSFE 60 WPALEANGNL RANPSQKDNE SKERSLVNAI SLEQNMINVA GWSRESENNV IEGSERSTRW 120 WIAPSGNPGC TISVAQRLIK AVEYLRELTR NKDVLIQIWV PVNRGGRRVL TTSDQPYSLY 180 SSCPRLARYR DISGKFHFSA EEDSKESVGL PGRVFLGKVP EWTPDVRFFR SDEYPRVGHA 240 QEFNICGTLA LPIFEQGSRT CLGVIEVVMT TQQIKIRPEL ESVREALEAV DLRGSDALST 300 DNVKACNTAY QAALPEIQEV LRSACETHRL PLAQTWVPCI QQGKEGCRHS DDNYVDCVST 360 VDHACIVADP NMLGFHEACS EHHLLKGQGI VGGAFRTNQP CFSTDITSFS KTEYPLSHHA 420 RVFGLHAAVA IHLRSIHTGT ADFVLEFFLP VNCTDPEEQK NMLSSLSIII QQVCQSLRVV 480 TDKELQEDTY LPVNGKPSTE DMLHEKSREF WPCQPDSSLK RNVEFGEECS AYDEGSFPSM 540 GMGMGMGKAG EKRRTKAEKN ITLEVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGIKRW 600 PSRKIKKVGH SLQKLQLVID SVQGASGAFQ INPLYTNFTE LGSPKLSGTC SFTASKLSDH 660 LQPSSIKAEG EFFSPEAVAS KSPSSCSQTS TSSQCCSSGA QQHPLMCNVG GCEVVGENHG 720 DGVLKRISSE AEIQATNQGP KLLSRSQSHK SLNAKNLTSS RKNSARVFQE GFAQKVKVTY 780 GEEKVRFRMQ NNWSYADLLL EIARRYNIED MSRFYIKYLD DDAEWILLTC DADLEECIDV 840 CQSSHSHTIK LSLQVSHHNL GKSLGISGPS

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MEDGVLSPGT MLDALPDSGM DLDFMDNIFF DGFWLEATDG SEFLHHSPSS SGALLVPSFE  60
WPALEANGNL RANPSQKDNE SKERSLVNAI SLEQNMINVA GWSRESENNV IEGSERSTRW  120
WIAPSGNPGC TISVAQRLIK AVEYLRELTR NKDVLIQIWV PVNRGGRRVL TTSDQPYSLY  180
SSCPRLARYR DISGKFHFSA EEDSKESVGL PGRVFLGKVP EWTPDVRFFR SDEYPRVGHA  240
QEFNICGTLA LPIFEQGSRT CLGVIEVVMT TQQIKIRPEL ESVREALEAV DLRGSDALST  300
DNVKACNTAY QAALPEIQEV LRSACETHRL PLAQTWVPCI QQGKEGCRHS DDNYVDCVST  360
VDHACIVADP NMLGFHEACS EHHLLKGQGI VGGAFRTNQP CFSTDITSFS KTEYPLSHHA  420
RVFGLHAAVA IHLRSIHTGT ADFVLEFFLP VNCTDPEEQK NMLSSLSIII QQVCQSLRVV  480
TDKELQEDTY LPVNGKPSTE DMLHEKSREF WPCQPDSSLK RNVEFGEECS AYDEGSFPSM  540
GMGMGMGKAG EKRRTKAEKN ITLEVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGIKRW  600
PSRKIKKVGH SLQKLQLVID SVQGASGAFQ INPLYTNFTE LGSPKLSGTC SFTASKLSDH  660
LQPSSIKAEG EFFSPEAVAS KSPSSCSQTS TSSQCCSSGA QQHPLMCNVG GCEVVGENHG  720
DGVLKRISSE AEIQATNQGP KLLSRSQSHK SLNAKNLTSS RKNSARVFQE GFAQKVKVTY  780
GEEKVRFRMQ NNWSYADLLL EIARRYNIED MSRFYIKYLD DDAEWILLTC DADLEECIDV  840
CQSSHSHTIK LSLQVSHHNL GKSLGISGPS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836416.1	0.0	PREDICTED: protein NLP2-like isoform X2
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A2I4FXP9	0.0	A0A2I4FXP9_JUGRE; protein NLP2-like isoform X2
STRING	EMJ11696	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein