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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016115-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24308.2 Da PI: 9.6692 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa a++aa+++++g WALNUT_00016115-RA 28 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAHAYDAAAREFRG 77 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-14 | 28 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-38 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-33 | 28 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.44E-19 | 28 | 85 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.078 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MAIKVKDSLG VRKGSNIRRA TADDKEMHYR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT 60 AEEAAHAYDA AAREFRGSKA KTNFPSPNDC SPTDRSPSQS STVESTSPKA EARGVSRLQE 120 MGGGSGFLGR PVAAPFPFLN QQAYVGGVVG SFSHVSPVLF VDALGRPEFV TQTYPIRFDP 180 SAVDFNLGMG SGVQSESDSS SVVDCKPRAR KELNLDLNLA PPVDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 25 | 85 | 2 | 63 | ATERF1 |
3gcc_A | 5e-22 | 25 | 85 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT223018 | 8e-43 | KT223018.1 Prunus persica ethylene responsive factor 9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814873.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 9e-51 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A2I4E666 | 1e-164 | A0A2I4E666_JUGRE; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_008455284.1 | 2e-63 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-33 | erf domain protein 9 |