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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015973-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 417aa MW: 46319.7 Da PI: 8.2348 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 156.1 | 2e-48 | 126 | 274 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 +gkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt++ s+ +++c+++++s+s+ +++++ WALNUT_00015973-RA 126 TGKKDRHSKICTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKELTESISQVKQSCSDGTKSVSVTSDNEEisen 216 79**************************************************************888888996666666666555556689 PP TCP 89 ...............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + ++++ ++++++++ l +a++sr karararertr+km+i+ WALNUT_00015973-RA 217 veiagddgdqggfgaDVESFNLMAREKTNRKS--LIVARDSRDKARARARERTRNKMMIR 274 9999999*****96544444445555555555..9**********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.9E-44 | 126 | 272 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.71 | 128 | 186 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.916 | 253 | 270 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MFPCSSDHTP FTYSTCQSIL EKPFANDEKT SSGHEEEHPS SYTHLSASFL EDDELFLSHF 60 LSQQKLFFGS TSQAETENSV AASVKATNDK KEASGNTVAE QMPSKKPLPN KKSRGGAKQT 120 VPRKRTGKKD RHSKICTAHG PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFTKSK 180 TAIKELTESI SQVKQSCSDG TKSVSVTSDN EEISENVEIA GDDGDQGGFG ADVESFNLMA 240 REKTNRKSLI VARDSRDKAR ARARERTRNK MMIRGLEVSK QMSEGENPNN LGQLCSSIPV 300 EEAGEESSFR GQERKSSLQM VADQVEEPIN HLLEHQINYS VSINERFLGV IGAPRSSLIL 360 NHSRNVAASS GGNPTEDFPG FPVNWINNNN ANMQRSMKPS TGNVQLRIPG VQFPWVP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018823676.1 | 0.0 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | A0A2I4EW99 | 0.0 | A0A2I4EW99_JUGRE; transcription factor TCP12 | ||||
STRING | EOY02151 | 7e-89 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-34 | TCP domain protein 12 |