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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015962-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | RAV | ||||||||
Protein Properties | Length: 370aa MW: 40738.9 Da PI: 9.4715 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 5.8e-14 | 64 | 112 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g WALNUT_00015962-RA 64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 112 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 102.4 | 2.5e-32 | 199 | 299 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k tpsdv+k++rlv+pk++ae+h g++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ WALNUT_00015962-RA 199 FEKSVTPSDVGKLNRLVIPKQHAEKHfplqTGSTSKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVCFQRSTG 289 89***************************97778899**************************************************8877 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +++l++ + WALNUT_00015962-RA 290 PDKQLHIDWK 299 8888888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-25 | 64 | 119 | No hit | No description |
Pfam | PF00847 | 8.9E-9 | 64 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-17 | 64 | 120 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-20 | 65 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 65 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-29 | 65 | 126 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 193 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-30 | 197 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.81E-29 | 198 | 296 | No hit | No description |
PROSITE profile | PS50863 | 14.085 | 199 | 302 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-29 | 199 | 298 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-26 | 199 | 302 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MEGSCIDEST TSTDTISISP ATLSSFPATK SPESLCRVGS GTTSTILDSE NGIEAESRGK 60 LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KAYDIAAQRF RGRDAVTNFK 120 PLAAASTTEE EDIETAFLNS HSKAEIVDML RKHTYNDELE QSKRNHGLDG NGGKRSKGEG 180 FLGNSFGSGR FFKAREQLFE KSVTPSDVGK LNRLVIPKQH AEKHFPLQTG STSKGVLLNF 240 EDIGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD IVCFQRSTGP DKQLHIDWKG 300 RTGSGVVGLS NPVFPVQPVQ MVRLFGVNIL QVPGVGVVDH SIGGCNGKRV REMDLLALEC 360 SKKQRMVGAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-58 | 196 | 306 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018823697.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9C6M5 | 1e-155 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2I4EWD9 | 0.0 | A0A2I4EWD9_JUGRE; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | VIT_01s0011g03070.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-151 | RAV family protein |