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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015735-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 503aa MW: 55802.9 Da PI: 8.3596 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 147.3 | 1.1e-45 | 126 | 274 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 +gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++ +ai elt++ s ++ c+++++s+s+ ++s+ WALNUT_00015735-RA 126 TGKKDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSRTAITELTESISHVKQTCSDGAKSVSVTSDSEVvsen 216 79**************************************************************555555564444444444333334455 PP TCP 89 ............kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 a ++ ++ ++k + + + +a++sr+karararertr+km+i+ WALNUT_00015735-RA 217 veiasdgdqrgfCADVESFNRVATEKTNRKLHIVARDSRNKARARARERTRKKMMIRG 274 556666777777444444455555555555567788*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-43 | 126 | 271 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.409 | 128 | 186 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.504 | 252 | 269 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MFPRSSSDQG PFIYTSPSIL EKPFANNEKT SSGQDQEHPS SYSHLSAPFF EDDELFFSHF 60 LSQQKLFVCS NSQAEIENSV AATDKATDNR KEACSNTVAE QIPSKRKFPN KKSIGDAKPT 120 GPRKRTGKKD RHSKICTAQG PRDRRMRLSL QIARKFFDLQ DMLGFDKASK TIEWLFSKSR 180 TAITELTESI SHVKQTCSDG AKSVSVTSDS EVVSENVEIA SDGDQRGFCA DVESFNRVAT 240 EKTNRKLHIV ARDSRNKARA RARERTRKKM MIRGHEVSTE ISVGPNPNNS NLVRLCSSSP 300 QLETGNQESY FPSQNMKSSP KIVAEVEERC SHLLGHQIDS VCINENFLGI VGAPTSSNLV 360 LNDSRNDLAA SSGGNTEEDF PGFPVNLSSN SNNNANMQSF CCTTSTNTKS STGNVQLRIP 420 SAMGTSKSHE LKHTSIFMTT YNTQEQIMLN SIFRSSTPNI QDQNRSSIFF TSLNTQRENP 480 STNFLATSIN NCLQSHFLGN EFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 268 | KARARARERTRKK |
2 | 261 | 269 | ARERTRKKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835934.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A2I4FWA6 | 0.0 | A0A2I4FWA6_JUGRE; transcription factor TCP12-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 5e-33 | TCP domain protein 12 |