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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015425-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 349aa MW: 39612.5 Da PI: 9.6045 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.3 | 1.1e-41 | 93 | 237 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssa............secea 75 ++kkd+ ski+T++g+RdRRvRls +a++fFdLqd+LGfdk+s+t++WLl ++ +aik+ ++ + ++ + WALNUT_00015425-RA 93 PVKKDQRSKIYTSQGLRDRRVRLSTGIARKFFDLQDMLGFDKASQTVDWLLSKSRKAIKDVAQMnrfssP--TSghevisginidvN---- 177 68**************************************************************655331..222222222211111.... PP TCP 76 esssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +s + ++++ + ++ k+aas + l+kesrakar+rarertrek ++ WALNUT_00015425-RA 178 ---------DSGNlegrvsksrslLGVSKEKVKMERVKKAASIHLLSKESRAKARERARERTREKICNG 237 .........22223444555556644444445666777777799**********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-37 | 94 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.741 | 95 | 153 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.211 | 216 | 233 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MFSSTNSLNP PSHYYPSSSC HYFPSPFPNH EFDGIFHNEQ HHDQLAGRFL TTNYAPIFPE 60 NVSFAVSRYP TMTMQNNGEY YSSSISNFLA EKPVKKDQRS KIYTSQGLRD RRVRLSTGIA 120 RKFFDLQDML GFDKASQTVD WLLSKSRKAI KDVAQMNRFS SPTSGHEVIS GINIDVNDSG 180 NLEGRVSKSR SLLGVSKEKV KMERVKKAAS IHLLSKESRA KARERARERT REKICNGRLH 240 ESKKLDAGST QIVQQYLRSQ SDQLEACIRS SYKVVGEIEV LSSHLIADRD PGASISDESF 300 VIRRNLKPSE ILNYQPNLMI SKDLSSNNEN SNYFPNLGLT WDIDNTVEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815432.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A2I4E7Q5 | 0.0 | A0A2I4E7Q5_JUGRE; transcription factor CYCLOIDEA-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-28 | TCP family protein |