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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015424-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | RAV | ||||||||
Protein Properties | Length: 311aa MW: 35158.8 Da PI: 9.5326 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41 | 4.8e-13 | 37 | 85 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+++d ++r++lg+f+ +e Aa a++ a+++++g WALNUT_00015424-RA 37 SKYKGVVPQP-NGRWGAQLYDK-----HQRVWLGTFDEEEHAAHAYDIAALRFRG 85 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 95 | 5e-30 | 169 | 269 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kv tpsdv+k++r+v+pk++ae++ ++ ++++ l led ++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD v F+++g+ WALNUT_00015424-RA 169 FEKVVTPSDVGKLNRMVIPKQHAEKYfplpIESAAKGVLLNLEDDARKVWRFRYCYWSSSQSYVLTKGWTRFVKEKNLKAGDRVSFQRSGE 259 99**************************9944567999*************************************************9998 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 +l+++ + WALNUT_00015424-RA 260 PANKLFIGCR 269 8888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.36E-17 | 37 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.8E-8 | 37 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.85E-24 | 37 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-21 | 38 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-27 | 38 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 38 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-39 | 165 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-29 | 166 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.68E-28 | 167 | 260 | No hit | No description |
Pfam | PF02362 | 3.7E-27 | 169 | 269 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-25 | 169 | 271 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.029 | 169 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MKKSLELSCQ EGLVSRAVSN SESIGRFEAE SKKLPSSKYK GVVPQPNGRW GAQLYDKHQR 60 VWLGTFDEEE HAAHAYDIAA LRFRGNNAIT NFKLSLDGNK DVVELYFLNS HSKDEIVDML 120 RKHSYACELE QTRYNISACT GTRKTTKSNG EFEDTPGSDP FDVARKHLFE KVVTPSDVGK 180 LNRMVIPKQH AEKYFPLPIE SAAKGVLLNL EDDARKVWRF RYCYWSSSQS YVLTKGWTRF 240 VKEKNLKAGD RVSFQRSGEP ANKLFIGCRP QKGSSLVGMS DQENSSKSVE ATRLIRLFGV 300 NILEAPANHV L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-47 | 168 | 276 | 13 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018815429.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-108 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A2I4E7Q9 | 0.0 | A0A2I4E7Q9_JUGRE; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | XP_010265251.1 | 1e-121 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-110 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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