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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
WALNUT_00015310-RA |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family |
TCP |
| Protein Properties |
Length: 331aa MW: 36213.9 Da PI: 6.8495 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00015310-RA | genome | JHU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 116.3 | 3.9e-36 | 20 | 168 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...ea 75
+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + +a
WALNUT_00015310-RA 20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwhppgtsnstavQ------QpdpNA 104
79**************************************************************777776543333221......022222 PP
TCP 76 esssssasnsssg............................kaaksaakskksqksaasalnla 111
+s + + +++s++ +a k++ ks ++++sa+s ln++
WALNUT_00015310-RA 105 GSAELTIAEQSESsgydfllhrqlegnpddnsafippsldsEAIKDTLKSLFPTSSATSSLNFQ 168
2222222222222445556555555666666666666666544455556666666666666655 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MKSTGGEIVQ VQGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIQF YDVQDRLGYD 60
RPSKAVDWLI KKAKSAIDKL AELPPWHPPG TSNSTAVQQP DPNAGSAELT IAEQSESSGY 120
DFLLHRQLEG NPDDNSAFIP PSLDSEAIKD TLKSLFPTSS ATSSLNFQSY PSDIISRASN 180
PSEEYLGLSL HSFQDHSTPN DHNLFSGSAS MGFDINYQRM VAWNSDTSGE HRGDFVFNSQ 240
TLPQQALLGQ GSAFSQRGPL QSSFAPPFRA WDDLPIATSD HHKTLPIHQS LVCGSRFATD 300
TLSGFCIPAT IRGEEERSAN KPSSASSNSR H
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| Functional Description ? help
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| Source |
Description |
| UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT1G53230.1 | 9e-74 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
| Publications
? help Back to Top |
- Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Koyama T,Sato F,Ohme-Takagi M
Roles of miR319 and TCP Transcription Factors in Leaf Development.
Plant Physiol., 2017. 175(2): p. 874-885
[PMID:28842549] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Mazur MJ, et al.
Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
Front Plant Sci, 2017. 8: p. 2043
[PMID:29250092]
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