PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014603-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 812aa MW: 89809.6 Da PI: 5.3337

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014603-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1e-20	83	138	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r++L++ lgL+ rqVk+WFqNrR+++k WALNUT_00014603-RA 83 KKRYHRHTARQIQEMESLFKECPHPDDKQRQKLSQDLGLKPRQVKFWFQNRRTQMK 138 688899***********************************************998 PP
2	START	152.6	3.3e-48	286	513	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla. 77 la + ++elvk+ + +ep+W ++ +ng evl +e ++ +++ea r+s+vv+m++ +lv +ld++ +W e ++ WALNUT_00014603-RA 286 LAVSSMDELVKMCQGTEPLWIRDN--QNGREVLNLEEHARMfprslnlikqhsneFRTEATRDSAVVIMNSITLVDAFLDSN-KWVELFPs 373 78899***************99..888888888877777888888*******************************.**** PP ...EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS START 78 ...kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156 +a+t++vissg g lqlm+aelq+lsplvp R+ f+Ry++q ++g+w+ivd +ds ++ ++s+ ++pSg+li++ WALNUT_00014603-RA 374 ivsRAKTVQVISSGdsghaisGSLQLMYAELQVLSPLVPtREAHFLRYCQQnAEEGTWTIVDFPIDSFHDKL-QPSFPIYMRRPSGCLIQD 463 **************************************************************999987.777777777***** PP ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ng+s+vtwveh+ ++++ +h+l+ +v sg+a+ga +w+a lqrqce+ WALNUT_00014603-RA 464 MPNGYSRVTWVEHAVVEEKPVHQLFSEFVYSGMAFGAHRWLAVLQRQCER 513 **********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-19	74	141	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-21	76	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	80	140	IPR001356	Homeobox domain
SMART	SM00389	5.6E-19	81	144	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-18	83	138	IPR001356	Homeobox domain
CDD	cd00086	1.30E-18	83	141	No hit	No description
PROSITE pattern	PS00027	0	115	138	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	42.466	276	516	IPR002913	START domain
SuperFamily	SSF55961	1.14E-29	277	515	No hit	No description
CDD	cd08875	4.91E-118	280	512	No hit	No description
SMART	SM00234	2.1E-32	285	513	IPR002913	START domain
Pfam	PF01852	8.6E-41	286	513	IPR002913	START domain
SuperFamily	SSF55961	3.43E-19	531	710	No hit	No description
SuperFamily	SSF55961	3.43E-19	738	776	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MYGDCQVMST LRGDVVSPDT LFSSAPVQNP SFNFMPFQPF PPMIAKEENG LLRGKDEMES 60 GSGSEQVEEK SGNEQESEQP PKKKRYHRHT ARQIQEMESL FKECPHPDDK QRQKLSQDLG 120 LKPRQVKFWF QNRRTQMKAQ QDRADNGILK AENESLRQEN FRLQRALSNV VCPNCGGPGM 180 LGGEMGFDEH QLRLENARLR EELERACCLA SQYAGRPIGA VQSAAMLMAP SLDLDMNMFS 240 RHFSDPMASC TDQMIPVPML MPPETSTHYP EGGLLLEEEK PIALELAVSS MDELVKMCQG 300 TEPLWIRDNQ NGREVLNLEE HARMFPRSLN LIKQHSNEFR TEATRDSAVV IMNSITLVDA 360 FLDSNKWVEL FPSIVSRAKT VQVISSGDSG HAISGSLQLM YAELQVLSPL VPTREAHFLR 420 YCQQNAEEGT WTIVDFPIDS FHDKLQPSFP IYMRRPSGCL IQDMPNGYSR VTWVEHAVVE 480 EKPVHQLFSE FVYSGMAFGA HRWLAVLQRQ CERVASLMAR NISDLGVIPS PEARKNLMKL 540 AQRMIRTFCI NTSTSSGLIW TALSDYPDDT VRISTRKITE PGQPNGLVLC AVSSTWLPYT 600 HDLVFDLLRD ERRRSQLDVL SNGNSLHEVA HIANGSHQGN CISLLRINVA SNSSQHVELM 660 LQESCTDPSG SLVVYTTIDV DSIQHAMSGE DPSCIPLLPI GFVIVPVGST DTTNISGDGN 720 QIPSSEDQGG NAPSSSPGCL LTIVVQVLAS TVPSAKLNLS SVSAINNHLC NTVHQITAAL 780 SSSTSTTGTT SWPDNSTSAL GSCTEIASAT PN

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MYGDCQVMST LRGDVVSPDT LFSSAPVQNP SFNFMPFQPF PPMIAKEENG LLRGKDEMES  60
GSGSEQVEEK SGNEQESEQP PKKKRYHRHT ARQIQEMESL FKECPHPDDK QRQKLSQDLG  120
LKPRQVKFWF QNRRTQMKAQ QDRADNGILK AENESLRQEN FRLQRALSNV VCPNCGGPGM  180
LGGEMGFDEH QLRLENARLR EELERACCLA SQYAGRPIGA VQSAAMLMAP SLDLDMNMFS  240
RHFSDPMASC TDQMIPVPML MPPETSTHYP EGGLLLEEEK PIALELAVSS MDELVKMCQG  300
TEPLWIRDNQ NGREVLNLEE HARMFPRSLN LIKQHSNEFR TEATRDSAVV IMNSITLVDA  360
FLDSNKWVEL FPSIVSRAKT VQVISSGDSG HAISGSLQLM YAELQVLSPL VPTREAHFLR  420
YCQQNAEEGT WTIVDFPIDS FHDKLQPSFP IYMRRPSGCL IQDMPNGYSR VTWVEHAVVE  480
EKPVHQLFSE FVYSGMAFGA HRWLAVLQRQ CERVASLMAR NISDLGVIPS PEARKNLMKL  540
AQRMIRTFCI NTSTSSGLIW TALSDYPDDT VRISTRKITE PGQPNGLVLC AVSSTWLPYT  600
HDLVFDLLRD ERRRSQLDVL SNGNSLHEVA HIANGSHQGN CISLLRINVA SNSSQHVELM  660
LQESCTDPSG SLVVYTTIDV DSIQHAMSGE DPSCIPLLPI GFVIVPVGST DTTNISGDGN  720
QIPSSEDQGG NAPSSSPGCL LTIVVQVLAS TVPSAKLNLS SVSAINNHLC NTVHQITAAL  780
SSSTSTTGTT SWPDNSTSAL GSCTEIASAT PN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852246.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like
Refseq	XP_018852247.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like
Refseq	XP_018852248.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like
Refseq	XP_018852249.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like
Refseq	XP_018852250.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5-like
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A2I4H7X9	0.0	A0A2I4H7X9_JUGRE; homeobox-leucine zipper protein HDG5-like
STRING	EOY25185	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10946	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]