PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00014502-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 544aa MW: 60814.3 Da PI: 7.2369

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00014502-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.6	1.9e-08	286	349	2	69
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 +Y +Y+k+ GF v+k++ ++ ++g + + + C + g ++++ + ++r++ ++gCka+++ WALNUT_00014502-RA 286 YYMKYGKKKGFGVSKRNIRQD-DDGIVRWFCLACARGGISKSTVAN---VMKPRQTVKMGCKARINAI 349 8***********9988776.9999999********99888...889999*******9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-6	286	350	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MISSPQIPKK NNRQNGLSAI EDVNPKAHST INQSVTDDHS LLRAQGKVVA TRGSRREGQE 60 EMEMYNLHLI SVVLVLSPDE AKGKLEPNGE TSKPALHEKK EGEVAEEQDR ENFMSSVQVI 120 KATETENLVD KADGEIVPKE LTDWGEFVTI AEADNTLNSF SSQEPNTLLL KEDPAQRSLR 180 RLPPVYPVRR SHLPQPHEFE HHQSLGHLSV VGPVVFVSQQ FHFPSIAVSH CNMSEENLNV 240 AMDADIEFSN NECDEVEIDK EIGGDETIEE PTVGMQFSSV EEVHAYYMKY GKKKGFGVSK 300 RNIRQDDDGI VRWFCLACAR GGISKSTVAN VMKPRQTVKM GCKARINAIE QLKTRYPGIA 360 DHDTSNTVDT TPSTEASTPR VISPLVVRRK LRKGNKYNRP WVRRRRDGRE TGGARTRGAG 420 GDGCAERGRR VGDDAESVVR GLGEEKKNEI EVGDERSEME EREMRSERVL CSRRTYFPSP 480 SPQAFFFLGL YSRQPRSLCK PIAKPRSQVR DSATHDLVVV VGKGFTTHNH DFVNGSLCKN 540 TAKP

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MISSPQIPKK NNRQNGLSAI EDVNPKAHST INQSVTDDHS LLRAQGKVVA TRGSRREGQE  60
EMEMYNLHLI SVVLVLSPDE AKGKLEPNGE TSKPALHEKK EGEVAEEQDR ENFMSSVQVI  120
KATETENLVD KADGEIVPKE LTDWGEFVTI AEADNTLNSF SSQEPNTLLL KEDPAQRSLR  180
RLPPVYPVRR SHLPQPHEFE HHQSLGHLSV VGPVVFVSQQ FHFPSIAVSH CNMSEENLNV  240
AMDADIEFSN NECDEVEIDK EIGGDETIEE PTVGMQFSSV EEVHAYYMKY GKKKGFGVSK  300
RNIRQDDDGI VRWFCLACAR GGISKSTVAN VMKPRQTVKM GCKARINAIE QLKTRYPGIA  360
DHDTSNTVDT TPSTEASTPR VISPLVVRRK LRKGNKYNRP WVRRRRDGRE TGGARTRGAG  420
GDGCAERGRR VGDDAESVVR GLGEEKKNEI EVGDERSEME EREMRSERVL CSRRTYFPSP  480
SPQAFFFLGL YSRQPRSLCK PIAKPRSQVR DSATHDLVVV VGKGFTTHNH DFVNGSLCKN  540
TAKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	405	RRKLRKGNKYNRPWVRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17