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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00014255-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 19751.4 Da PI: 8.2919 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 203 | 1.2e-62 | 6 | 154 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +se+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+a + q+++ ++ + ++++ n e s+s++ WALNUT_00014255-RA 6 MASERVCYVHCNFCNTTLAVSVPCSSLLTMVTVRCGHCANLLSVNMAASLQAVPPQDT-------------Q--KQQYLINSEDCGSSSKY 81 689******************************************9999999998885.............2..23333333444444444 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ ++e +r pp irPPekrqrvPsaynrfi+eeiqrika+nPdishreafs+aaknWahfP+ih+gl WALNUT_00014255-RA 82 GKLAAFEAV-EHEQSRRPP-IRPPEKRQRVPSAYNRFIREEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHYGL 154 444444333.444555566.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-71 | 7 | 154 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.93E-8 | 95 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.7E-5 | 102 | 148 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSMDMMASER VCYVHCNFCN TTLAVSVPCS SLLTMVTVRC GHCANLLSVN MAASLQAVPP 60 QDTQKQQYLI NSEDCGSSSK YGKLAAFEAV EHEQSRRPPI RPPEKRQRVP SAYNRFIREE 120 IQRIKAGNPD ISHREAFSTA AKNWAHFPHI HYGLKVDDNK QAKLDQTLAG SEGTQNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018844482.1 | 1e-133 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 2e-75 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2I4GKQ5 | 1e-132 | A0A2I4GKQ5_JUGRE; putative axial regulator YABBY 2 isoform X1 | ||||
STRING | VIT_06s0009g00880.t01 | 1e-94 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 9e-78 | YABBY family protein |
Publications ? help Back to Top | |||
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