PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013779-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 898aa    MW: 99656.8 Da    PI: 6.6021
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013779-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24127228199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  WALNUT_00013779-RA 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 214
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  WALNUT_00013779-RA 215 -WNEKNQLLLGIRRA 228
                         .8899999****997 PP
2Auxin_resp120.21.6e-39253336183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  WALNUT_00013779-RA 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 336
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-21126227No hitNo description
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
SMARTSM010192.0E-24127229IPR003340B3 DNA binding domain
PfamPF023623.5E-22127228IPR003340B3 DNA binding domain
PfamPF065072.5E-34253336IPR010525Auxin response factor
PfamPF023094.2E-7756850IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-6759840No hitNo description
PROSITE profilePS5174522.663765849IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MRHSAAGLSP QTQEGEKRVL NSELWHACAG PLVSLPAAGS RVVYFPQGHS EQVAASTNRE  60
VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLNLQEQKDA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRTWQPG FPSFHGIKEE DLGINSPLMW LRGDNGDRGI QPLNFQGIGV  420
TPWIQPRLDA SMLGLHTDMY QAMAAAALQE MRAVDPSKPS HTSLLQFQQP QNLQSRSSAL  480
MQPQMVQQSQ SQQAFQQGVQ ENQHQSHSQG QTQSQLLQQQ LHQHSFNSQQ QQQQQQQQQL  540
LGHQQISSTV STISQFASSS QSHSPSLQAI SSLCQQQSFS DSNGNPVTSP IVSPLHSLLG  600
SYPQDESTHL LNLSRTNSLI PSAAWPSKRA AVEPLLSPVA TQCALPQVEK LGLPQTNISP  660
NSISLPPFPG RECSIDQGGT DPQSHLLFGV NIEPSSLLMQ NGMSGLRGVG SESESTTIPF  720
SSSNYMSTAG TDFSLNPAMT PSSCIDESSF LQSPENVGQV NPQTRAFVKV YKSGSFGRSL  780
DITKFSSYHE LRGELARMFG LEGELEDPQR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW  840
CIKILSPQEV QQMDRRDSEL LNSVPIQRLS NTGCDDYANR QDSRNLSSGI TSVGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847680.10.0PREDICTED: auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2I4GUU80.0A0A2I4GUU8_JUGRE; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]