PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013600-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 437aa    MW: 47896.2 Da    PI: 5.6503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013600-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.6e-31216274259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+g+H h+
  WALNUT_00013600-RA 216 ADMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCPARKQVERSNIDPNIFIVTYTGDHSHP 274
                         69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-31202276IPR003657WRKY domain
SuperFamilySSF1182903.79E-26210276IPR003657WRKY domain
PROSITE profilePS5081133.074210276IPR003657WRKY domain
SMARTSM007745.7E-37215275IPR003657WRKY domain
PfamPF031066.3E-26217274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MADDWDLHAV VRSCKSAATK NSIATNTNTN TSIAAASEDP LACLASLTFE EENDLLSFPL  60
LAEPRTNAFH ELQELCKSFF PTTTTSTATT TTSHRIISPN SSSISDVQRR RHPVQPNPTI  120
SAARSRFKPE PSASSSSGLG GVQDQQQRRH AQQQPQQQNQ PYQQRQQVNQ QEFQRPRASS  180
AMSLPAAMQS QAPRSRKRKS QQKRTVCHVT AENLSADMWA WRKYGQKPIK GSPYPRNYYR  240
CSSSKGCPAR KQVERSNIDP NIFIVTYTGD HSHPRPTHRN SLSGSTRNKC STSGVMSTDK  300
DNSGSPITAN AASCSSPQST TNLSPTTQLT VQTDEEAVIT NKNSNEDNKI MVDANDKERK  360
EMADDADDDD DDDDDQEDDD QILIPNMAMT EDIFMGLQQL GYSSPGGGSG DNFSDDGRAN  420
SGSWPQCDSA AAMDGCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-192162771780Disease resistance protein RRS1
5w3x_D1e-192162771780Disease resistance protein RRS1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847313.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A2I4GTU10.0A0A2I4GTU1_JUGRE; probable WRKY transcription factor 27
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-53WRKY DNA-binding protein 27