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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013083-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 522aa MW: 55060.3 Da PI: 7.5021 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.6 | 1.5e-40 | 151 | 254 | 2 | 111 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+s+ s++ WALNUT_00013083-RA 151 TPVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSLRSSGSTLSAP--- 238 6779*****************************************************************9998888888888855444... PP TCP 92 ksaakskksqksaasalnla 111 +sk++++s + al+la WALNUT_00013083-RA 239 ----PSKSASHSFHGALALA 254 ....2222222222233333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-38 | 156 | 279 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.737 | 157 | 211 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MELTDLQSNK QTNTTTHHHH HQQQHHHHHQ HHHPQQQQNQ STSSHLVVPF DGRSGGPFMG 60 SISIQAGLST HAGASTSSSS SPLPSSSSSS STSTSTALDA SLAIATRSDS HPASTRSAPL 120 LDSIKKDPQQ QLSIVPIATT TTTTTATTTP TPVKRSTKDR HTKVDGRGRR IRMPATCAAR 180 VFQLTRELGH KSDGETIEWL LQQAEPAIIA TTGTGTIPAN FSTLNVSLRS SGSTLSAPPS 240 KSASHSFHGA LALAHHPYHE EGFAHPAFLG FHQQQQQQHL MTADQIGEAL PSGGGSGSGG 300 GGESGGGGDS TENYMRKRFR EDLFKEDTHT QPQGGESGGG ESNSPSGNKA FKSGLQLPKA 360 QVQEAGSSGL LRPSNILPAT FWMLPVNAGS GGPSVAITTS GAGPSESHMW TFPTAPTASG 420 NTLQAPLHFM PRFNLPGSSL EFQGSRASPL QLGSMLMQQQ PSQHLGLGVS ESNLGMLAAL 480 NAYSRSGGLN MNSDQHNHPL DQHHQHQRQA NDSGDEGPNS SQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835544.1 | 0.0 | PREDICTED: transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 6e-79 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A2I4FV70 | 0.0 | A0A2I4FV70_JUGRE; transcription factor TCP8-like | ||||
STRING | EOX97160 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-65 | TCP family protein |
Publications ? help Back to Top | |||
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