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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013076-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 543aa MW: 56955.3 Da PI: 7.6395 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.8 | 1.3e-40 | 152 | 255 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ WALNUT_00013076-RA 152 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIDATGTGTIPANFStLNVSLRSSGSTLSAP---- 238 6799****************************************************************9997788888887744444.... PP TCP 93 saakskksqksaasalnlak 112 +sk++++s + +l+la+ WALNUT_00013076-RA 239 ---PSKSASHSFHGHLALAH 255 ...34444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.8E-39 | 156 | 278 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.418 | 157 | 211 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MELTDLQSNK QSNTTTTRHH QQHQHQHHHH HHPQQNQSSN SHLVAPFDGR SGGPFMGSIS 60 IQAGLSTHGG SSTSSSSSSL SSSSTSSSPS SSTAPPHLVD ASLAIATRSD SQPSTRSAPL 120 LDSIKKSPNQ QNQQLSIVPT TTTTTATATT TPVKRSTKDR HTKVDGRGRR IRMPATCAAR 180 VFQLTRELGH KSDGETIEWL LQQAEPAIID ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS 240 KSASHSFHGH LALAHHSYLE EGFGHPAFLG FHQQQQQHLM TADQIAEALP SGGGGGSGGG 300 VESGGGGDST ENYMRKRFRE DLFKEDVHNQ PQGSESGGGG DGNSPSGNKH FKSGLQLPKA 360 QVQDQAGSSG LLRPSNILPA TAMWAVAPAP SSGAGSTFWM LPVTAGAGGP SVTTTTTSGA 420 GPSESHMWTF PTAPTASGNT LQAPLHFMPR FNLPGSLEFQ GSRANPLQLG SMLMQQQQQQ 480 QPPSQHLGLG VSESNLGMLA ALNAAYSRGS LNMNSGHQNH PLEHHQHQPQ ATDSGDEGPS 540 SSQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835543.1 | 0.0 | PREDICTED: transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 3e-83 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A2I4FV69 | 0.0 | A0A2I4FV69_JUGRE; transcription factor TCP8-like | ||||
STRING | EOX97160 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 2e-61 | TCP family protein |
Publications ? help Back to Top | |||
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