PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012587-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 497aa    MW: 56845.9 Da    PI: 9.4274
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012587-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.37.2e-1212603686
            trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                        +k+++ g++rs+k+Ckek+en+ k++k++keg+ ++  ++ + +++fdql+
  WALNUT_00012587-RA 12 RKLADLGYNRSAKKCKEKFENVCKYHKRTKEGRTGK--PEGKAYRFFDQLQ 60
                        578899****************************96..44457******98 PP
2trihelix971.7e-30305390187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+++e +++++  k++ We++s+ mr+ g+ rs+k+Ckekwen+nk++kk+k+++ kr  e+s+tcpyf+ql+a
  WALNUT_00012587-RA 305 RWPKAEVQALIRIRKSLELKYQESGTKGQMWEDISAGMRRLGYIRSAKRCKEKWENINKYFKKVKDRNLKR-REDSNTCPYFQQLDA 390
                         8********************************************************************98.78888********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-81261No hitNo description
PROSITE profilePS500907.213298362IPR017877Myb-like domain
PfamPF138378.7E-23304391No hitNo description
CDDcd122035.48E-26304369No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVFFFANVVI IRKLADLGYN RSAKKCKEKF ENVCKYHKRT KEGRTGKPEG KAYRFFDQLQ  60
AFERQPSSSS TVGHPKPKAA SSTSTTVSQI TVPLKTNPTF ISQSLNIAVF PTISNSTVSP  120
APVIEPAKFS AQTNNPRRRD PFQSTISANL FSRTSTSSST ESDQELKASY MRKRKWKGFF  180
RRIAKEVIEK QEKLQQKFLE AIDKQENERT VREEAWRMQE MERINQEHEV LVRECSTAAA  240
NDAAIIAFLQ KISGQSHPTQ AHDDNNTVLS LTLLPRPLPP QLSNSSDLQK MGSFENISTP  300
TSSSRWPKAE VQALIRIRKS LELKYQESGT KGQMWEDISA GMRRLGYIRS AKRCKEKWEN  360
INKYFKKVKD RNLKRREDSN TCPYFQQLDA LYKDKNKINS SVVSTPPGRS VKPASSGLME  420
PLMVQPERQW RPIQEDIFNL PQSTAPDIYH DDHRENVEQN QEEDRDADDD SDEEEDQDGG  480
GGYEMVINKP SLMENTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369375DRNLKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848173.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
SwissprotQ391171e-114TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I4GWA40.0A0A2I4GWA4_JUGRE; trihelix transcription factor GT-2-like isoform X1
STRINGPOPTR_0002s06900.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-104Trihelix family protein