PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00012455-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24808 Da PI: 9.027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g WALNUT_00012455-RA 35 KFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAALSLRG 84 89*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.79E-19 | 35 | 92 | No hit | No description |
SMART | SM00380 | 3.4E-37 | 35 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 35 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-13 | 35 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.736 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-10 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRRGRTADPG VVPGKNFCRE TNSNSQYKAT IKEVKFRGVR KRPWGRFAAE IRDPWKKTRV 60 WLGTFDSAED AARAYDAAAL SLRGPKAKIN FPLTAPQLAR VQVRDEGGFS VVSGKFVNQI 120 QPPARPTTSS MSSTVESFSG PRVVVVPRVK AVLPHTPVHP VAPEDCRSDC DSSSSVVDDN 180 DEDCVLTSSF RRVLPFDLNL PPPMYGGEFG RNDDEEDIRA TALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 32 | 93 | 2 | 64 | ATERF1 |
3gcc_A | 2e-21 | 32 | 93 | 2 | 64 | ATERF1 |
5wx9_A | 4e-21 | 35 | 92 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827030.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 2e-39 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A2I4F5V4 | 1e-163 | A0A2I4F5V4_JUGRE; ethylene-responsive transcription factor 3-like | ||||
STRING | XP_008456400.1 | 2e-52 | (Cucumis melo) | ||||
STRING | XP_004143195.1 | 2e-52 | (Cucumis sativus) | ||||
STRING | XP_004172004.1 | 2e-52 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2263 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 3e-24 | ethylene responsive element binding factor 3 |