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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | WALNUT_00012093-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family | BBR-BPC | ||||||||
| Protein Properties | Length: 337aa MW: 37214.9 Da PI: 9.8373 | ||||||||
| Description | BBR-BPC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GAGA_bind | 393.1 | 4e-120 | 1 | 337 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
mdd g+re r+k+ +y++a + l +++ +q+m++iaerda+++ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l
WALNUT_00012093-RA 1 MDDGGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMTIIAERDAALQERNLALSEKKAAFAERDMAILQRDAAIAERNNAIMERDNAIATL 91
9*****999*****9***655544444432146********************************************************** PP
GAGA_bind 85 llvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrak.kpkekkakkkk 168
+++ensl+ s++p+g+q+++g+k+i++ qq +++ p++++ + ++r++++++ l ++ ++e+ ++++ k+++++k + ++ka+k+
WALNUT_00012093-RA 92 QYRENSLSsgnmSSCPPGCQISRGVKHIHHPQQhVHHlPHMGEASNNTRDMHTSDGLAASQVESETAKSRRAKRTKETKgMTTASKASKPP 182
******9999999********************55559**************999998887766666665555443332133333444433 PP
GAGA_bind 169 kksekskkkvkkesader............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWq 231
+k +++ ++ + + sk+++k +dl+ln+vs+D+st+P+PvCsCtG+lrqCYkWGnGGWq
WALNUT_00012093-RA 183 RKIKSESDDLN------KimfgksqewkggpemgvggddlnrqsgaSKSDWKGQDLGLNQVSFDDSTMPAPVCSCTGILRQCYKWGNGGWQ 267
33333333333......123333356899************************************************************** PP
GAGA_bind 232 SaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
S+CCttt+S+yPLP+++++r+aR++grKmS++af+kl+++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
WALNUT_00012093-RA 268 SSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 337
*********************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF06217 | 6.8E-103 | 1 | 337 | IPR010409 | GAGA-binding transcriptional activator |
| SMART | SM01226 | 1.2E-175 | 1 | 337 | IPR010409 | GAGA-binding transcriptional activator |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 337 aa Download sequence Send to blast |
MDDGGHRENG RHKADQYKSA QGQWLMQHQP SMKQIMTIIA ERDAALQERN LALSEKKAAF 60 AERDMAILQR DAAIAERNNA IMERDNAIAT LQYRENSLSS GNMSSCPPGC QISRGVKHIH 120 HPQQHVHHLP HMGEASNNTR DMHTSDGLAA SQVESETAKS RRAKRTKETK GMTTASKASK 180 PPRKIKSESD DLNKIMFGKS QEWKGGPEMG VGGDDLNRQS GASKSDWKGQ DLGLNQVSFD 240 DSTMPAPVCS CTGILRQCYK WGNGGWQSSC CTTTLSMYPL PAVPNKRHAR VGGRKMSGSA 300 FNKLISRLAA EGHDLSNPVD LKDHWAKHGT NRYITIK |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018821117.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_018821118.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_018821119.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_018821120.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_018821121.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Refseq | XP_018821122.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| Swissprot | Q8L999 | 1e-156 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
| TrEMBL | A0A2I4ENY7 | 0.0 | A0A2I4ENY7_JUGRE; protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
| STRING | GLYMA04G02860.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF6905 | 34 | 49 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G42520.1 | 1e-157 | basic pentacysteine 6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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