PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011203-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 846aa    MW: 96610.8 Da    PI: 9.6236
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011203-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.8e-14581331899
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +pkkf++++g  +  s    l+ ++g +W+v+l  ++++g+++++kGW+eF +   +k g  +vFk++g+s f  +v vf++
  WALNUT_00011203-RA  58 FPKKFVRKYG--EGLSNLALLKLPNGAEWKVEL--TQCDGGVWFQKGWQEFLEYYSIKLGHLLVFKYEGHSHF--RVLVFDE 133
                         7********8..44787899999**********..*********************************99999..8988886 PP
2B366.24.8e-21270366197
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f  v+ ps+v++++ l lp +fa+++ +kk    +++l+ ++gr W+vk+i+  + + +r v++ GW+ F+++n+L++gD++vF+l++  e
  WALNUT_00011203-RA 270 FMAVMQPSYVGSRNYLNLPISFAKSYLNKKVD--DIILRVSDGRYWSVKYIFqmSATMSRGVFGCGWRVFARDNNLEVGDVCVFELIKGIE 358
                         778999********************766656..7***************996655555699************************98755 PP

                         E..EEEEE CS
                  B3  90 felvvkvf 97 
                         +++ v +f
  WALNUT_00011203-RA 359 TSFQVVIF 366
                         55677766 PP
3B349.48.5e-16436519788
                         .-HHHHTT-E......E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   7 psdvlksgrl......vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         ps+v ++++l       +p +f+++  +k+++  ++++ +   +sW v++    +s+r+++++GW+ F+++n+L++gD++vF+l++++
  WALNUT_00011203-RA 436 PSHVCNNSNLvsfefqAVPGSFLKSRYMKERR--QIVMLQVGDESWPVTV--LSTSSRVTMSGGWSTFARDNKLQAGDVCVFELIKSD 519
                         55555554444444447899999888666545..6999************..99999**************************99754 PP
4B348.51.5e-155246011699
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++p++f++++g  +  s    l+ ++g +W+++l  +k++gr++l+kGW+eF +   Lk g  +vF+++g+s f  ++ vf++
  WALNUT_00011203-RA 524 KMIPRRFIRKYG--EGLSNVAFLKLPNGAEWKLEL--TKCDGRVWLQKGWQEFMEYYSLKLGHLLVFRYEGNSHF--YILVFDE 601
                         49*********8..44787889999**********..**********************************9999..9999886 PP
5B357.91.9e-18751844199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+ vl ps+  + + +++  +f+ +++    +++++++     +sW vk++   +s+++ +t+GW+ Fvk+n L++gD++ F+l++++++ 
  WALNUT_00011203-RA 751 FKVVLQPSYLCRGCKMSVLGRFL-DIK----QNVQMVMLLVGDKSWPVKFRSYPHSSSVAFTSGWSTFVKDNSLQVGDVCAFELIKSDDAM 836
                         67788899999999********9.553....446788888999*******99*********************************99**** PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         l+v++fr+
  WALNUT_00011203-RA 837 LKVSIFRN 844
                         *****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.955140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-7336IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-6336No hitNo description
SuperFamilySSF1019362.35E-6334IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.88541134IPR003340B3 DNA binding domain
SMARTSM010196.7E-750134IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1954133IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-1957134IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1257132No hitNo description
PfamPF023622.9E-1157133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-26263369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-25264370IPR015300DNA-binding pseudobarrel domain
CDDcd100174.37E-24268366No hitNo description
SMARTSM010193.7E-19270369IPR003340B3 DNA binding domain
PfamPF023622.4E-19270367IPR003340B3 DNA binding domain
PROSITE profilePS5086315.679270369IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18421519IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18423518IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-14428519No hitNo description
PfamPF023622.6E-13434520IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419436519IPR003340B3 DNA binding domain
SMARTSM010194.0E-4450521IPR003340B3 DNA binding domain
CDDcd100174.03E-16515600No hitNo description
SMARTSM010198.1E-9522602IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-20525601IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-12525601IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-19526602IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.83526602IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-17744843IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18746841IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-21749843No hitNo description
SMARTSM010195.4E-13751845IPR003340B3 DNA binding domain
PfamPF023622.1E-16751844IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83751845IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MPGGWSTFVR ENKLQVGDIY VFELIKSDDD ILKVSIKSNI YYKEVNMDPI WYAIKSRFPK  60
KFVRKYGEGL SNLALLKLPN GAEWKVELTQ CDGGVWFQKG WQEFLEYYSI KLGHLLVFKY  120
EGHSHFRVLV FDESATEIEY PFNSSLGEDK LDAEILASPR EETRADGSVE ILDDFPKDTK  180
TREKSWLPCP RAQKMMRTNP SEKTTSTSNM PRLAQQNLHS TKQELEGAEG IFITEQCPKY  240
NVPRTQTVSV DEKTRALEKA SGFKPENPYF MAVMQPSYVG SRNYLNLPIS FAKSYLNKKV  300
DDIILRVSDG RYWSVKYIFQ MSATMSRGVF GCGWRVFARD NNLEVGDVCV FELIKGIETS  360
FQVVIFHATQ ERCPQSPGEL KFSAKGETRD MPNSLMRRQS HIFKKQRWTA GNKARALERA  420
SSFKSENPFL TVAMFPSHVC NNSNLVSFEF QAVPGSFLKS RYMKERRQIV MLQVGDESWP  480
VTVLSTSSRV TMSGGWSTFA RDNKLQAGDV CVFELIKSDD DILKMIPRRF IRKYGEGLSN  540
VAFLKLPNGA EWKLELTKCD GRVWLQKGWQ EFMEYYSLKL GHLLVFRYEG NSHFYILVFD  600
ESATEIDYPS SSSLGEGENL DGELLVSRME QTDSDSHAQI LDDFPTLTKT RKKSQLPSPQ  660
PRKMMRTNRS AKPASTSNLS RSVPPHRSKD AKSFEYSLMI ICLSAKGSKP VPTTKRCPKS  720
KTLRMTRMLN VNEKARALQR ASGFRPESPY FKVVLQPSYL CRGCKMSVLG RFLDIKQNVQ  780
MVMLLVGDKS WPVKFRSYPH SSSVAFTSGW STFVKDNSLQ VGDVCAFELI KSDDAMLKVS  840
IFRNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-2024484323144B3 domain-containing transcription factor VRN1
4i1k_B6e-2024484323144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830212.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2I4FEY60.0A0A2I4FEY6_JUGRE; B3 domain-containing transcription factor VRN1-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-46B3 family protein