PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011104-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 568aa    MW: 62550.8 Da    PI: 7.6351
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011104-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP101.85.3e-32177265277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.............EEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.............fhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv gC++dls+ k+y+++hkvCevhsk+++v+v+g+eqrfCqqCs              fh l efD+ krsCr+rLa+hnerrrk+q
  WALNUT_00011104-RA 177 CQVYGCNKDLSSFKDYNKKHKVCEVHSKTSKVIVNGMEQRFCQQCSSqkeplknlkfvqlFHLLAEFDDCKRSCRKRLAGHNERRRKPQ 265
                         *********************************************9445555566666679**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-26171251IPR004333Transcription factor, SBP-box
PROSITE profilePS5114126.666174264IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.24E-31175267IPR004333Transcription factor, SBP-box
PfamPF031101.5E-22177263IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MEPWNYVGEG KGLEPDGVVL PSNSPSRNKK TWLGLEFRTP CSYGNQLVSG QQEAVENQGF  60
EELGFREIID KQLAYDSFGE VLSRHVGGGR VVNPITAMSN AIAEDDSTSK LSSSVVDSNS  120
RDSSFFDLKL GRLPDHRDAC NSKFSKGIPI LSSSESSVPP AKRTRTSSGL HSRTAFCQVY  180
GCNKDLSSFK DYNKKHKVCE VHSKTSKVIV NGMEQRFCQQ CSSQKEPLKN LKFVQLFHLL  240
AEFDDCKRSC RKRLAGHNER RRKPQVGSQF RRDGRLLQSY DGLVGGNRFQ GSSISTTSFI  300
CPEILPSDLL HPEKYGTSDQ CRHLKAKDRT DYGPLSTNEH LHSKFPLPWA IEKQSPTFHE  360
NTATGNIFSA NISQYTHDIG GPTSSSHSLL QNTSFGSEEF NFSDAASTAQ GLSRILDSGC  420
ALSLLSSHSQ NSSSHLNGIP MACPLIMPSC NPHDSMGQVS QRFIGISSQP SSGGVLNKFP  480
SSEINSAEEN CLCPITPSDG SGAVNFGIAD GNFQGSVILN SNDRHSCENR PTIDLLQLSS  540
QLQRVEHQRQ SMQMKQQEND AFFCLRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-24167263584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824815.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_018824816.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
RefseqXP_018824817.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X1
TrEMBLA0A2I4EZJ30.0A0A2I4EZJ3_JUGRE; squamosa promoter-binding-like protein 6 isoform X1
STRINGEOY221290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-41SBP family protein