PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009567-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | Trihelix | ||||||||
Protein Properties | Length: 326aa MW: 38288 Da PI: 9.4374 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 74.7 | 1.6e-23 | 45 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 +W++qe+++ i++r e+e + ++ + +lWe vs +m+erg++r+p+qCk+kw+nl +ryk ++ e + ++ WALNUT_00009567-RA 45 QWSQQETREFIAIRAEVEMERDLTAatnantisgvpnsgkrsKTTALWEVVSGRMSERGYKRTPEQCKCKWKNLLNRYKLVQGKETSD-PD 134 7**************7666655322235667777777787778899****************************************96.99 PP trihelix 75 ssstcpyfdqlea 87 ++++cp+fdql+a WALNUT_00009567-RA 135 NVRQCPFFDQLHA 147 999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0025 | 42 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.2E-21 | 44 | 147 | No hit | No description |
CDD | cd12203 | 1.78E-17 | 44 | 123 | No hit | No description |
PROSITE profile | PS50090 | 6.899 | 46 | 119 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MFGGRADVEG LGRMNMMKSV TLLNPNPNPK PPLERVGPQT PTQPQWSQQE TREFIAIRAE 60 VEMERDLTAA TNANTISGVP NSGKRSKTTA LWEVVSGRMS ERGYKRTPEQ CKCKWKNLLN 120 RYKLVQGKET SDPDNVRQCP FFDQLHAVFT ERAKNMQRLL LESEAGSSQA KKSFKRSTGD 180 RSSDEISDEE DEDEYDSEGE RPAKSNSRRR KAERLTLDKP SRATNMGHAS TSKNSDIQEL 240 LKEFFQQQHR MEMQWREMME RRVQERVFFE QEWRQTMAKL ERERIMAEQT WREREEQRRM 300 REETRAERRD ALLTTLLNKL LHENNL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833766.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b-like isoform X1 | ||||
TrEMBL | A0A2I4FQ46 | 0.0 | A0A2I4FQ46_JUGRE; trihelix transcription factor GT-3b-like isoform X1 | ||||
STRING | GLYMA01G35370.2 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 6e-17 | Trihelix family protein |