PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008952-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 520aa    MW: 57387.7 Da    PI: 6.4555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008952-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09334376754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++Er RR+++N+++  Lr+++Pk +      K+  a+iL  A+e++k+L
  WALNUT_00008952-RA 334 MAERHRRKKLNDRLYMLRSVIPKiS------KMHRASILGDAIEFLKEL 376
                         79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-14325393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.732327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-7333376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13334389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-8334380No hitNo description
CDDcd048736.57E-6447509No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MKKTSEALLS KERKTDPNIL SRVNGVVWMG SLSSYKSMLE LEDEWYNMDN HTAQNHLTFS  60
PNLADHVPES LLLHPADSSS SCSPASSVFT NLDPSQVHYL LPPKPTPSSL INGLSKNPLE  120
HGFELGCDVG LVEAQASNVP TFLNREGGFL SNFTDLSSNS QINALGIRSD FQLQTTRLLT  180
FPEADAGFAG CKGLDEDSGN ALFMNRSKIL RPLESFTSTG AQPTLFQKRA ALRKNLAGCG  240
GNLAISNAVE GDKGKKEMGE QGEGNRKLSI GDDVEDASFD GYGLNYDSDE FTENDKAEGN  300
AKDKGGNSSN AINSITGGEE QRGKKKGLPA KNLMAERHRR KKLNDRLYML RSVIPKISKM  360
HRASILGDAI EFLKELLQRI NDLHNELEST PSWLFTVSYH KLPPFDTHST YPTQPNKGRD  420
LPELNAQPKW PSCKVEVRVR EGRAVNIHMF CGRRPVLLLS TMRALDNLGL DIQQAVISCV  480
NGFAMDIFRA EQYKEEQGQD VYPEQIKAVL LDSAGLHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323341KKKGLPAKNLMAERHRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018832724.10.0PREDICTED: transcription factor ICE1-like isoform X1
TrEMBLA0A2I4FM280.0A0A2I4FM28_JUGRE; transcription factor ICE1-like isoform X1
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-103bHLH family protein