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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008722-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 33871.1 Da PI: 7.183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 142 | 192 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f ta eAaka+++a+ kl+g WALNUT_00008722-RA 142 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFNTAIEAAKAYDRAAFKLRG 192 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.43E-31 | 141 | 200 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 141 | 200 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 142 | 206 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-23 | 142 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-14 | 142 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 142 | 200 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 143 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 182 | 202 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MASFLESSTL DLIRQHLLCD FTSMESFISN LDVCNSNISQ NQPIQTSELK NGGSNGDIEV 60 SAYLLPKEEP VTYPSSSFNQ TNSDLETKPK PFHSNPPQTS NLSHRRPSIN VAIPPPTFRL 120 NSQPMLEAGC NPNVSNHSES KHYRGVRRRP WGKFAAEIRD PNRKGSRVWL GTFNTAIEAA 180 KAYDRAAFKL RGSKAILNFP LEFTANTPEN NTAEVSVGRK RTRESEIEEE TNRVVERKEV 240 KEEPVERARE VMAESVSAAV HPLTPSSWTE VWDCEVKGIF SVPPLSPLPP HPSLGYSRLM 300 VIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-30 | 141 | 201 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-30 | 138 | 205 | 1 | 68 | ATERF1 |
3gcc_A | 9e-30 | 138 | 205 | 1 | 68 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831214.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A2I4FHS8 | 0.0 | A0A2I4FHS8_JUGRE; ethylene-responsive transcription factor 5-like | ||||
STRING | XP_008234445.1 | 2e-86 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 4e-41 | ERF family protein |