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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008396-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 451aa MW: 50237.4 Da PI: 7.0462 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 272 | 321 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+ge WALNUT_00008396-RA 272 FRGVRQRH-WGKWVAEIRLPKN---RTRVWLGTFDTAEEAAVAYDTAAYMLRGE 321 8******9.**********965...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.63E-32 | 270 | 330 | No hit | No description |
PROSITE profile | PS51032 | 22.682 | 271 | 328 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 271 | 329 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 271 | 330 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-36 | 271 | 334 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 272 | 321 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 272 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 294 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MEHQLPKMGM IYMMQNDHEL PSYVQGTAVD VGSSFFGDPN YIIWGALNQR ALQEHGGNGC 60 MKSLSSASPD SLFSGSDSTS STDQEASVST LTKNIPRCTK QNLIHKHHLS PFISGLNSDH 120 VPPGASASVR AKESFMIPVN FLDTFPKLAQ SQVSQPSSPS SFSVTAAKSP NLTLFLQEPI 180 TMLESRNADD SPGKNVNIKC QSISSSSNPS FPMSKPGQIP SHWDNEWHGI KRDLKNYSSW 240 LSTSKTQPMK YNTQRMQDEQ QKTDFSSQGK LFRGVRQRHW GKWVAEIRLP KNRTRVWLGT 300 FDTAEEAAVA YDTAAYMLRG EYAQLNFPDQ KHQLQTNSLN GATAALLEAK LRGLSQGISA 360 HTKPTEPPQT SPKINHPYDE NTKLKHLSQN PSRKEWLQFE TLESKVGSEI LIESKKITQE 420 VLSDVDAVDQ LSTMPSLDMD MIWDALLFSE S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 267 | 328 | 1 | 63 | ATERF1 |
3gcc_A | 3e-21 | 267 | 328 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018860180.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
TrEMBL | A0A2I4HVJ1 | 0.0 | A0A2I4HVJ1_JUGRE; ethylene-responsive transcription factor ERF062-like | ||||
STRING | cassava4.1_023072m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 1e-50 | ERF family protein |