PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008359-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 500aa    MW: 55642.6 Da    PI: 4.9087
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008359-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.6e-34211122102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+kly +++d+e+++++sws+ +nsfvv++++efa k+Lpk+Fkh+n+aSF+RQLn+YgFkkv++++          eF++ +F kg+ +
  WALNUT_00008359-RA  21 FLRKLYAMVDDPETDSVVSWSDGNNSFVVWNPHEFAAKLLPKHFKHKNLASFIRQLNTYGFKKVDSDR---------YEFANVKFLKGQSH 102
                         9*****************************************************************99.........78************ PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  WALNUT_00008359-RA 103 LLKSISRRKP 112
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-3612105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5217110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-2921110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-172144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-175971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-177284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MADVNDAGSS TTATTDTLPP FLRKLYAMVD DPETDSVVSW SDGNNSFVVW NPHEFAAKLL  60
PKHFKHKNLA SFIRQLNTYG FKKVDSDRYE FANVKFLKGQ SHLLKSISRR KPVHVPTEVP  120
SSSVGACVEV GKFGLDEEVK RLERDKNVLM QELVKLRQHQ QATDHQLQNV GQRVQVLEQR  180
QQQMMSFLAK AMQSPGLFAQ FVQQQNESNR NITGGTKKRR LPNQEESVAG ESRTNAPEGQ  240
IIKYQQPSMN EAAKTLLRQI LKMNGSPRVE PLMNNPDAFL FDDAPFTNTF DRGNSLNRVS  300
GVTLSEFLPI SAELFMPAEP EFPISSPSTA NSDIQSSSYA MPDHAIEAQF PNLDVYNSQE  360
ETVLPNFTEL QGIMPKSTAE IPDMNLAGSE TGNASYVDPM SLLDGSRPIK TGTFYPQNDV  420
EALLDEIPVL PGINDTFWEQ FLTGTPVTGD VDEIILSSLD GDVTMDHGLQ MGKKNGLDKI  480
QHMNRLTEQM GLLASESRMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-251211020129Heat shock factor protein 1
5d5v_B4e-251211020129Heat shock factor protein 1
5d5v_D4e-251211020129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829016.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_018829017.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotO818211e-143HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A2I4FBJ60.0A0A2I4FBJ6_JUGRE; heat stress transcription factor A-1b-like
STRINGXP_008226279.10.0(Prunus mume)
STRINGEMJ130330.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-136heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]