PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008327-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 526aa    MW: 57298.6 Da    PI: 8.1534
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008327-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33231287259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  +++++ei+Y+g+Hnhe
  WALNUT_00008327-RA 231 DDGYNWRKYGQKQVKGSECPRSYYKCTHLNCPVKKKVERSP-NGQITEIIYKGQHNHE 287
                         8****************************************.***************7 PP
2WRKY105.52.8e-33416474159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++dpk+v++tYeg+Hnh+
  WALNUT_00008327-RA 416 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNSGCNVRKHVERASTDPKAVVTTYEGKHNHD 474
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-29224289IPR003657WRKY domain
PROSITE profilePS5081123.353225289IPR003657WRKY domain
SuperFamilySSF1182904.32E-26229289IPR003657WRKY domain
SMARTSM007743.7E-37230288IPR003657WRKY domain
PfamPF031061.1E-25231287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36401476IPR003657WRKY domain
SuperFamilySSF1182902.48E-29408476IPR003657WRKY domain
PROSITE profilePS5081138.48411476IPR003657WRKY domain
SMARTSM007744.0E-39416475IPR003657WRKY domain
PfamPF031064.3E-26417474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSKKEVSATV SSAPAPLRPT ITLPSRPSLE TFFTGGPGAS PGPMTLVSSF FSDNYPDAEC  60
RSFSQLLAGA MASPLARPSF YTDNSAGNSA KEPGTDTPSG FKQSRPMNLV VARSPMFTIP  120
PGLSPSGLLN SPGFFSPLSP FGMSHQQALA QVTAQAAFAQ SQILAEYQPS SVAAPTESLT  180
HNPSFTLNEA SQQHMAPSTA DPRSSVMESS EASHPDRKYQ PSSSAIDKPA DDGYNWRKYG  240
QKQVKGSECP RSYYKCTHLN CPVKKKVERS PNGQITEIIY KGQHNHELPL PNRRAKEGGD  300
VNGNMNSQAK PNLDLQSQAG NWNPASDVVP DHSVPQSDRE STQAGPLQLP ASSDSEEEGD  360
AEAREEGDLT EPNPKRRHVP NLVPVTDAGT SEIPFQHKTV TEPKIIVQTR SEVDLLDDGY  420
RWRKYGQKVV KGNPHPRSYY KCTNSGCNVR KHVERASTDP KAVVTTYEGK HNHDIPAARN  480
NSHNTANRIA QQKVVSEKHS LLKDIGFGNN DQRPVPLRLK EEQITV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40231477878Probable WRKY transcription factor 4
2lex_A2e-40231477878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841096.10.0PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-145WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2I4GB320.0A0A2I4GB32_JUGRE; WRKY3
STRINGXP_008230819.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-131WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]