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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008321-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 401aa MW: 44193.9 Da PI: 4.4209 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g WALNUT_00008321-RA 46 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.77E-32 | 45 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 46 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 46 | 103 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-13 | 46 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-36 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.599 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MARKRKAGHD AVEDKSSSEG TMAWEEMVKE AAAAAALGGS ARARKRFVGV RQRPSGRWVA 60 EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGSNTRT NFWPCSSSSS SSPALPSKIT 120 NLLLQRLKAR NDTCAASPIS SPPISQQENK QAEVYREEET DILDTSFTHY LNDPEDFTDC 180 NNIVTSTSTT ASPDYMTTSF ESSITEKEDC GGREMGFDYN WSINAAQTSS GTEGNFGGEG 240 EEDGEEATTD VGTMDFQFLD AVGTCFYSPF EIAEEINAEP VEPENCTDEP SMLRAAMKRM 300 KYERKFSASL YAFNGIPECL KLKLRSGNLN VKGRGISDQL SHLQEACHNK MEKNAEVFEE 360 MMGKREDIPQ SSVEMGSSSS NNDGELSLWS SLDLPPICFV N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-13 | 39 | 102 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018840986.1 | 0.0 | PREDICTED: uncharacterized protein LOC109006231 | ||||
TrEMBL | A0A2I4GAR6 | 0.0 | A0A2I4GAR6_JUGRE; uncharacterized protein LOC109006231 | ||||
STRING | cassava4.1_008867m | 1e-174 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-22 | related to AP2 11 |