PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ERF

Protein Properties

Length: 257aa MW: 27823.7 Da PI: 4.7412

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00008216-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.6	3.2e-18	65	114	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g WALNUT_00008216-RA 65 VYRGVRMRS-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 114 59**998.******854...59********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	8.0E-37	65	128	IPR001471	AP2/ERF domain
Pfam	PF00847	3.9E-12	65	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.66E-21	65	122	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.5E-31	65	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.064	65	122	IPR001471	AP2/ERF domain
CDD	cd00018	4.66E-32	66	124	No hit	No description
PRINTS	PR00367	3.8E-10	66	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-10	88	104	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MADPPYSETE SSSNSSSPSP SSPFSSGLSR SLPGSAPNPT YKESSSPDPD PKQPKRARDS 60 SKHAVYRGVR MRSWGKWVSE IREPRKKNRI WLGTFSTPEM AARAHDVAAL SIKGNSAILN 120 FPELSGSLPR PASNSPRDVQ AAAAKAASME FEVPKTPSPS SSSSSYSSAT TVSSSSCDVS 180 TPEELSEIVE LPTLGTSFES VELSNDFVYV DSVDGWLYPP PWCHSSIDDI GYFRDNISMT 240 EAEGVIPSSF EPILWQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-19	60	123	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814845.1	0.0	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	9e-69	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A2I4E630	0.0	A0A2I4E630_JUGRE; dehydration-responsive element-binding protein 3-like
STRING	EMJ03663	2e-91	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-64	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]