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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00008177-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21012.4 Da PI: 10.6197 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.5e-21 | 11 | 55 | 3 | 47 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +++ s rqvtfskRrng++KKA+EL +LC+aevav+ fs+ gk + WALNUT_00008177-RA 11 VKDGSSRQVTFSKRRNGVFKKANELATLCGAEVAVVAFSPGGKPF 55 578899**********************************99855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-26 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.581 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.6E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-24 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGRRKIEMAM VKDGSSRQVT FSKRRNGVFK KANELATLCG AEVAVVAFSP GGKPFSFGQP 60 SVGAVSDRFL HRDQRKPNHG KTVVGSSKDG AKVSILTQQL NELLKQLYDE KKRGEMLEKA 120 KEKSGYKAPI INEMGLQELG ELKGSLERLR EDIKARVNEM EASSSLLLLA KKPVHESERP 180 VAKKVAKSYI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819644.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2I4EJR9 | 1e-135 | A0A2I4EJR9_JUGRE; agamous-like MADS-box protein AGL29 | ||||
STRING | EMJ14347 | 4e-65 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-38 | AGAMOUS-like 62 |