PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008016-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 677aa    MW: 75173.6 Da    PI: 5.4648
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008016-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.42e-1333106761374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsev 87 
                         lv+lLl+cAeav+++d  la+++L +l+  ++p gd+mqR+a++fteAL+arla + s++ k  ++ +++ +     s e l+++++ +++
  WALNUT_00008016-RA 310 LVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAATLSNTTKPSASIPKPFSPflpnSLEILKIYQIVYQA 400
                         68*****************************************************77777665544444333366779************* PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         +P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef
  WALNUT_00008016-RA 401 CPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGA----SIEAVSETGRCLTELAHSLHIPFEF 487
                         **************************************************************....9************************ PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                         ++ v ++ledl+ ++++ + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fd
  WALNUT_00008016-RA 488 HP-VGEQLEDLQAHMFNRRVGEALAVNTVNRLHRVP------GNYLGNLLTMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFD 571
                         **.7*******************************9......444557******************************************* PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                         sl+a++p++s++r+kvE+ ++++ei+n+va egaer+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e+ g+l+l
  WALNUT_00008016-RA 572 SLDATFPPDSSQRAKVEQYIFAPEIRNIVASEGAERIERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDMGCLLL 662
                         ******************************************************************************************* PP

                GRAS 361 gWkdrpLvsvSaWr 374
                         gW+dr+L+++SaWr
  WALNUT_00008016-RA 663 GWQDRSLIAASAWR 676
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.958284656IPR005202Transcription factor GRAS
PfamPF035147.1E-131310676IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MINSLCGSMG SLKSTEDSST TPQPTSPDES FSESKIKTTT TTTTTALHSD LEHNSLTPPS  60
LNFPTLKFDL DGDVEVQSPD SSLWESFFAD QLDGDFMISS PVRNLPSPQT SAYNYNHNYA  120
QAMQVQSLSG YSPPRFSAFS SSQKGKGLSP LQRVFNSPKN QYMKPDGLSL STIEDFLDDY  180
QREEFGAYPT TKVLSGIGSS SQCFDMPTLL PAVDGLTMAN SSRFCGSVNE TSTPGGSQLT  240
QERDIYQIGS TAGAPLSQQL QHERQQEKQL QQKQPQPRTQ EQHQQNLNHN NLIVPLPIDT  300
EQEQDSGLQL VHLLLACAEA VAKEDYMLAR RYLHHLNRVV TPLGDSMQRV ASCFTEALSA  360
RLAATLSNTT KPSASIPKPF SPFLPNSLEI LKIYQIVYQA CPYIKFAHFT ANQAIFEAFE  420
AEERVHVIDL DILQGYQWPA FMQALAARPS GAPFLRITGV GASIEAVSET GRCLTELAHS  480
LHIPFEFHPV GEQLEDLQAH MFNRRVGEAL AVNTVNRLHR VPGNYLGNLL TMIRDQAPNI  540
VTLVEQEASH NGPYFLGRFL EALHYYSAIF DSLDATFPPD SSQRAKVEQY IFAPEIRNIV  600
ASEGAERIER HERLEKWRKL MEGKGFKGVP LSANAVTQSK ILLGLYSCDG YRLTEDMGCL  660
LLGWQDRSLI AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1002986757378Protein SCARECROW
5b3h_A1e-1002986756377Protein SCARECROW
5b3h_D1e-1002986756377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834108.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2I4FR530.0A0A2I4FR53_JUGRE; DELLA protein RGL1-like
STRINGcassava4.1_032757m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-99GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]