PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRF

Protein Properties

Length: 609aa MW: 65177.6 Da PI: 8.6268

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007839-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	218	262	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e WALNUT_00007839-RA 218 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 262 79****************************************985 PP
2	QLQ	62.6	1e-21	148	184	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k WALNUT_00007839-RA 148 GPFTPSQWMELEHQALIYKYITANMPVPSNLLIPIRK 184 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.6E-13	148	184	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.317	149	184	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.3E-16	149	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.847	218	262	IPR014977	WRC domain
Pfam	PF08879	1.2E-20	219	261	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MDFGGVGFHG LMGSDCGFSS LASDPETKQK WHGAGLLKQQ RSGNSEDDLR SSKLAKTDDF 60 SASKAMLLQQ KNALLRSSCT LFSDGQRQQQ MLSFSSPKSE ILAAEKNSQN ATLPYFYQAL 120 SAYTRNTGYS SGNLDGSSVH GFLAGARGPF TPSQWMELEH QALIYKYITA NMPVPSNLLI 180 PIRKSLDSVA FSTFPGGLLR PSALGWGSFH LGFSNNTDPE PGRCRRTDGK KWRCSRDAVV 240 DQKYCERHMN RGRHRSRKPV EGQTGHAITG TTSSTSSTNS KLMPIASSTS ASAVVVPSSG 300 GGGASNSLAT AHQQLKNLQH DASNPSAATT NRMFVNKDNM GERMQDQPGL SMLSPASIDQ 360 KPKENSFTIQ KQQMTYEQPS RNVFGLVTSD SLLNPSHRSP SLMNCSSQEV SDRGAESQQS 420 LRHFIDDWPK AQADRSAISW PEMGMQSDGT QLSISIPLAS SDLISSTCSP ANEKLTLAPL 480 RLSTPELDPI RMGLGVGSSG VLNEPNQRQA NWIPISWKTS MGGPLGEVLH HGSNSSAADC 540 KNSSALNLMT AGWDNSPPVG SSPTGVLQKT AFGSLSNGSA GSSPRAENHK TVLEGAGGQC 600 NDPLGSQLL

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MDFGGVGFHG LMGSDCGFSS LASDPETKQK WHGAGLLKQQ RSGNSEDDLR SSKLAKTDDF  60
SASKAMLLQQ KNALLRSSCT LFSDGQRQQQ MLSFSSPKSE ILAAEKNSQN ATLPYFYQAL  120
SAYTRNTGYS SGNLDGSSVH GFLAGARGPF TPSQWMELEH QALIYKYITA NMPVPSNLLI  180
PIRKSLDSVA FSTFPGGLLR PSALGWGSFH LGFSNNTDPE PGRCRRTDGK KWRCSRDAVV  240
DQKYCERHMN RGRHRSRKPV EGQTGHAITG TTSSTSSTNS KLMPIASSTS ASAVVVPSSG  300
GGGASNSLAT AHQQLKNLQH DASNPSAATT NRMFVNKDNM GERMQDQPGL SMLSPASIDQ  360
KPKENSFTIQ KQQMTYEQPS RNVFGLVTSD SLLNPSHRSP SLMNCSSQEV SDRGAESQQS  420
LRHFIDDWPK AQADRSAISW PEMGMQSDGT QLSISIPLAS SDLISSTCSP ANEKLTLAPL  480
RLSTPELDPI RMGLGVGSSG VLNEPNQRQA NWIPISWKTS MGGPLGEVLH HGSNSSAADC  540
KNSSALNLMT AGWDNSPPVG SSPTGVLQKT AFGSLSNGSA GSSPRAENHK TVLEGAGGQC  600
NDPLGSQLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833808.1	0.0	PREDICTED: growth-regulating factor 6-like isoform X1
Swissprot	Q6AWY3	1e-115	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2I4FQ92	0.0	A0A2I4FQ92_JUGRE; growth-regulating factor 6-like isoform X1
STRING	EOY15657	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-101	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]