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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
WALNUT_00007410-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
| Family |
TCP |
| Protein Properties |
Length: 263aa MW: 27836.1 Da PI: 9.8575 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00007410-RA | genome | JHU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 123.6 | 2.2e-38 | 32 | 196 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88
a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a+s + + ss +
WALNUT_00007410-RA 32 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStLAVSVRAGGCGSSTSlss 122
78**************************************************************999996664222222222211111222 PP
TCP 89 .........................................................................k 89
+
WALNUT_00007410-RA 123 sststslshsldhkpllgptpfilgkrvradedadckdegpcvsvansmgsllgptatggfwalpartdfwsfA 196
22222333444555566666666666666666666666666666666666666666666666666666666654 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 263 aa
Download sequence Send
to blast |
MSNSDGANNG VSNGAIVDPQ RQQPGLNGSL VAVKKPPSKD RHSKVDGRGR RIRMPIICAA 60
RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTLAVSVR AGGCGSSTSL 120
SSSSTSTSLS HSLDHKPLLG PTPFILGKRV RADEDADCKD EGPCVSVANS MGSLLGPTAT 180
GGFWALPART DFWSFAAPQA EMVQVQQQQQ QQSLFVTHHH QHQQPMGEAS AARVGNYLPG 240
HLNLLASLSR GPGSSGRRED NPR
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK240798 | 8e-68 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. |
| GenBank | AP004776 | 8e-68 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. |
| GenBank | AP014958 | 8e-68 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 8e-68 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
