PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007210-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 686aa MW: 76154.7 Da PI: 6.1277

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007210-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	421.2	8.7e-129	304	670	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv+lL++c+ea+ ++ + +++++a+l e+asp+g+p+ Rl ay+teALa r++r +++++++ +p+e ++ +++ +al+l+++vsPi+ WALNUT_00007210-RA 304 LVSLLTACVEAIGFRNIAVINHFIAKLGEIASPQGSPISRLSAYYTEALAIRVTRLWPHIFHITTPRELDR-ADEDSSTALRLLNQVSPIP 393 6899**************************************************************985.556667899****** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el+etg+rLa fAe+l++pfef++ v WALNUT_00007210-RA 394 KFLHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPTHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-V 479 ******************************************************....***********************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 ++rled++l++L+vk++E++aVn+++q+h++l + + +++L l++s++Pkvv+++eqea+hn++++ +r +++l++ysa+fds++ WALNUT_00007210-RA 480 VDRLEDVRLWMLHVKEQECVAVNCIFQMHKTLYDGNGGA--LRDFLGLIRSTNPKVVIMAEQEAEHNEPRLETRASNSLKHYSAIFDSIDY 568 ****************************6554444..589******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlg 361 +lp +s+ r k+E++ ++rei+n++aceg++r erhe++ekWr+ +e+ GF+ + ++e+++ q +lll++++ + ++v+++ ++l+l WALNUT_00007210-RA 569 SLPLDSSVRLKIEEM-FAREIKNIIACEGRDRHERHESFEKWRKLIEQGGFRCMGINEREMLQSQLLLKMYSCENFSVKKQgqdGAALTLS 658 ***********.****************************************************9996544266777 PP GRAS 362 WkdrpLvsvSaW 373 W d+pL+++SaW WALNUT_00007210-RA 659 WLDQPLYTISAW 670 ************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.127	278	648	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-126	304	670	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLSEA PAQLQACHFQ LPSMSTQRLD LPCSFSRKDT SRSQPIRPVG 60 LSVEKSIESK TSSCSLKQSV RLPPLATSTQ KTSAQTTFIE AKREIKGEFW EQGKSLKRLA 120 EQGSVDDSCI SKAKRKKGGG DNGKSDEILG SGHDSLSLGQ LGAGNFWFQP GIEASRSVPG 180 ITGLNPPRVP FSLTTCSGDD ERNCYVPGEL ISPPLPLSNN PWVGSVVTEI TDLGEKDGET 240 SYRLVKEASG SSTSSDSQSL GHRLNENVSE QEVGNGSRNP YSHEDNEVEG REEDNQGEHQ 300 GFELVSLLTA CVEAIGFRNI AVINHFIAKL GEIASPQGSP ISRLSAYYTE ALAIRVTRLW 360 PHIFHITTPR ELDRADEDSS TALRLLNQVS PIPKFLHFTS NEILLRAFEG KDRVHIIDFD 420 IKQGLQWPSL FQSLASRTNP PTHVRITGIG ESKQELNETG DRLAGFAEAL NLPFEFHPVV 480 DRLEDVRLWM LHVKEQECVA VNCIFQMHKT LYDGNGGALR DFLGLIRSTN PKVVIMAEQE 540 AEHNEPRLET RASNSLKHYS AIFDSIDYSL PLDSSVRLKI EEMFAREIKN IIACEGRDRH 600 ERHESFEKWR KLIEQGGFRC MGINEREMLQ SQLLLKMYSC ENFSVKKQGQ DGAALTLSWL 660 DQPLYTISAW APLDVVGSSS SYSQPS

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLSEA PAQLQACHFQ LPSMSTQRLD LPCSFSRKDT SRSQPIRPVG  60
LSVEKSIESK TSSCSLKQSV RLPPLATSTQ KTSAQTTFIE AKREIKGEFW EQGKSLKRLA  120
EQGSVDDSCI SKAKRKKGGG DNGKSDEILG SGHDSLSLGQ LGAGNFWFQP GIEASRSVPG  180
ITGLNPPRVP FSLTTCSGDD ERNCYVPGEL ISPPLPLSNN PWVGSVVTEI TDLGEKDGET  240
SYRLVKEASG SSTSSDSQSL GHRLNENVSE QEVGNGSRNP YSHEDNEVEG REEDNQGEHQ  300
GFELVSLLTA CVEAIGFRNI AVINHFIAKL GEIASPQGSP ISRLSAYYTE ALAIRVTRLW  360
PHIFHITTPR ELDRADEDSS TALRLLNQVS PIPKFLHFTS NEILLRAFEG KDRVHIIDFD  420
IKQGLQWPSL FQSLASRTNP PTHVRITGIG ESKQELNETG DRLAGFAEAL NLPFEFHPVV  480
DRLEDVRLWM LHVKEQECVA VNCIFQMHKT LYDGNGGALR DFLGLIRSTN PKVVIMAEQE  540
AEHNEPRLET RASNSLKHYS AIFDSIDYSL PLDSSVRLKI EEMFAREIKN IIACEGRDRH  600
ERHESFEKWR KLIEQGGFRC MGINEREMLQ SQLLLKMYSC ENFSVKKQGQ DGAALTLSWL  660
DQPLYTISAW APLDVVGSSS SYSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-67	311	672	26	380	Protein SCARECROW
5b3h_A	1e-67	311	672	25	379	Protein SCARECROW
5b3h_D	1e-67	311	672	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018828642.1	0.0	PREDICTED: scarecrow-like protein 28 isoform X1
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A2I4FAG5	0.0	A0A2I4FAG5_JUGRE; scarecrow-like protein 28 isoform X1
STRING	EOY24632	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein