PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007047-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 600aa    MW: 65718 Da    PI: 7.5183
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007047-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.6e-25129230199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ 
  WALNUT_00007047-RA 129 FSKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDVHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFM- 216
                         88*********************999****985444444..9************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++ +++++v+v+r+
  WALNUT_00007047-RA 217 -RNPGGHMFVGVRRA 230
                         .6799*******996 PP
2Auxin_resp97.61.9e-32281364183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+P+a++seFvvk+e ve+al+v ++ GmR+kma+etedss+ ++ +Gtv+g s  d+  W++S+Wr+L+
  WALNUT_00007047-RA 281 AAELAAKGMPFEVVYYPSAAWSEFVVKAEAVEEALSVFWTTGMRVKMAMETEDSSRMTWfQGTVSGASIPDSGPWRGSPWRMLQ 364
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-36123236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29124241IPR015300DNA-binding pseudobarrel domain
CDDcd100177.67E-22128229No hitNo description
PROSITE profilePS5086312.196129231IPR003340B3 DNA binding domain
SMARTSM010197.6E-20129231IPR003340B3 DNA binding domain
PfamPF023626.1E-22129230IPR003340B3 DNA binding domain
PfamPF065072.7E-29281364IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MSPRDPTPAT NLRRLDPKLW RACAGNSVHI PTVHSMVYYF PQGHVEQSSS RPNSLSPLVL  60
SKPLIRCRIT AVEFHADPIT DEVFAKLLLQ PIDPQLSSAF PGSSQFIETS RNQPDRNDGA  120
GEEDKVVSFS KILTPSDANN GGGFSVPRFC ADSIFPPLNY QAEPPVQTLS VTDVHGVVWD  180
FRHIYRGTPR RHLLTTGWSK FVNHKKLVAG DSVVFMRNPG GHMFVGVRRA VRSSNGDSSG  240
RYSLPTGGTT RVTPEEDNAC GRERFWRSGR GRLSAEAVAE AAELAAKGMP FEVVYYPSAA  300
WSEFVVKAEA VEEALSVFWT TGMRVKMAME TEDSSRMTWF QGTVSGASIP DSGPWRGSPW  360
RMLQVTWDEP GVLPNAKGVS PWQVEYISPT SPLHTAFPPA KKFRAPQNSG LLTNGEGDPF  420
FPITGFTNST MRHMGQSFLN YNTFPAGMQG ARQNLFRQSG LSNLGENNIY TDNSYGNNMV  480
PKLKTVSTEL NIGSSKSEKL SPDSQSSVLS FGTELIGTQC CSSTKVGAGC FQLFGKIIHM  540
KQPVESGFDD SGCTEDDGIK GYNETEPLNN PLDLSLTYTK LLDRLDVQCK RASAVGACTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-711538551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849628.10.0PREDICTED: auxin response factor 17-like isoform X1
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2I4H0G50.0A0A2I4H0G5_JUGRE; Auxin response factor
STRINGEMJ268880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]