PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006649-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TALE

Protein Properties

Length: 697aa MW: 76014.5 Da PI: 8.223

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006649-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.8	1.9e-08	400	432	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gLt qV++WF N R + WALNUT_00006649-RA 400 HPYPKDSDKHLLAKQTGLTRGQVSNWFINARVR 432 89*****************************88 PP
2	BELL	120.4	7.9e-39	259	330	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakLl++l+eVd+rY+qy++q+q+vis Fe++ag+gsa+ Yt+lAl++iS++FrcLkd i++qi WALNUT_00006649-RA 259 ERQEIQMKKAKLLNMLDEVDQRYRQYHNQMQIVISTFEQAAGIGSARTYTALALQTISKQFRCLKDSITGQI 330 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.0E-64	184	328	IPR006563	POX domain
Pfam	PF07526	1.9E-49	191	327	IPR006563	POX domain
PROSITE profile	PS50071	11.677	373	436	IPR001356	Homeobox domain
SMART	SM00389	1.4E-7	376	440	IPR001356	Homeobox domain
CDD	cd00086	1.53E-10	376	437	No hit	No description
SuperFamily	SSF46689	4.71E-16	377	442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-27	379	442	IPR009057	Homeodomain-like
Pfam	PF05920	1.0E-16	393	432	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MATYFHGNSE IQAADGLQTL VLMNPAGYVQ YSEAPPQAQS TANNFVFLNS VAAAAAANSY 60 LPQAQQPHTQ QFVGIPLPTM ASAASQDPDS QSMNAHHEIS ALHGYVPRVQ YNLWNSLEPN 120 AAAREIPRAQ QGLSLSLSSQ QPGYGSFRAD REVPSQAQAP AISGEDMRIS GGSSSSASGV 180 TNGVSGMRSH VLLSSKYLKA AQELLDEVVN VGNGMKSEIL RKANGRAKVM GESSAAESGD 240 GSVGGEASGK RAAELSTAER QEIQMKKAKL LNMLDEVDQR YRQYHNQMQI VISTFEQAAG 300 IGSARTYTAL ALQTISKQFR CLKDSITGQI RAANKSLGEE DSPGGKIEGS RLKYVDHQLR 360 QQRALQQLGM IQHNAWRPQR GLPERSVSVL RAWLFDHFLH PYPKDSDKHL LAKQTGLTRG 420 QVSNWFINAR VRLWKPMVEE MYLEELKEQE QNGSEEKISK SNEDSASKSS APQEKSPATE 480 NRTKSFNSKR ENSTNQNAAP AFSVSKPSTS PVGGNVRNQS GFTLIGPSEW EGITQGSPKK 540 QRSNEMLHSP SSVPSINVDL KPNEANNEQL SMKFSDERQS RDGYSFMGGQ TNFIGGFGQY 600 PIGEIGRYDT EQFAPRYSGN GVSLTLGLPH CENLSLSATH HSFLPNQNIQ LGRRVVGEPN 660 DFGAISNSNP HSSAAYESIN IQNPKRFAAQ LLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MATYFHGNSE IQAADGLQTL VLMNPAGYVQ YSEAPPQAQS TANNFVFLNS VAAAAAANSY  60
LPQAQQPHTQ QFVGIPLPTM ASAASQDPDS QSMNAHHEIS ALHGYVPRVQ YNLWNSLEPN  120
AAAREIPRAQ QGLSLSLSSQ QPGYGSFRAD REVPSQAQAP AISGEDMRIS GGSSSSASGV  180
TNGVSGMRSH VLLSSKYLKA AQELLDEVVN VGNGMKSEIL RKANGRAKVM GESSAAESGD  240
GSVGGEASGK RAAELSTAER QEIQMKKAKL LNMLDEVDQR YRQYHNQMQI VISTFEQAAG  300
IGSARTYTAL ALQTISKQFR CLKDSITGQI RAANKSLGEE DSPGGKIEGS RLKYVDHQLR  360
QQRALQQLGM IQHNAWRPQR GLPERSVSVL RAWLFDHFLH PYPKDSDKHL LAKQTGLTRG  420
QVSNWFINAR VRLWKPMVEE MYLEELKEQE QNGSEEKISK SNEDSASKSS APQEKSPATE  480
NRTKSFNSKR ENSTNQNAAP AFSVSKPSTS PVGGNVRNQS GFTLIGPSEW EGITQGSPKK  540
QRSNEMLHSP SSVPSINVDL KPNEANNEQL SMKFSDERQS RDGYSFMGGQ TNFIGGFGQY  600
PIGEIGRYDT EQFAPRYSGN GVSLTLGLPH CENLSLSATH HSFLPNQNIQ LGRRVVGEPN  660
DFGAISNSNP HSSAAYESIN IQNPKRFAAQ LLPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	382	440	5	63	Homeobox protein Meis2
3k2a_B	2e-15	382	440	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851194.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851195.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851196.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851197.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851198.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851199.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851200.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_018851201.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2I4H4W5	0.0	A0A2I4H4W5_JUGRE; BEL1-like homeodomain protein 1
STRING	XP_007162972.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-161	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]