PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006445-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Nin-like

Protein Properties

Length: 1021aa MW: 112498 Da PI: 5.4836

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006445-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.3e-29	603	654	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ WALNUT_00006445-RA 603 AEKNVSLNVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 654 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	589	674	IPR003035	RWP-RK domain
Pfam	PF02042	4.9E-26	606	654	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-23	900	987	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-25	900	982	No hit	No description
SMART	SM00666	2.3E-23	903	985	IPR000270	PB1 domain
PROSITE profile	PS51745	21.718	903	985	IPR000270	PB1 domain
CDD	cd06407	1.70E-33	904	984	No hit	No description
Pfam	PF00564	1.1E-17	904	984	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence Send to blast
MDYPLFSKEK GTGFWASSKV QMENLLSFDG TRNLNSEENF TELMNFDTYA GWCNSPGAAD 60 QIFTSYGLSS SASMPHGASL DALNFTEQNT GAFPVNESHG NFNPMENSFN SGDKTMFQQM 120 DTRYGFSMDS NDTNDVAAAQ NTGSFQQNNA LNIENYIIPR PFSWSVDEKM LRALSLFKES 180 SGGGILAQVW VPMRLGDHYV LSTSEQPYLL DQMLAGYREV SRLFTFSAER GSDSFLGLPG 240 RVFISKVPEW TSNVRYYNKI EYLRVDHAAN HEVRGSIALP VFDSHSMSCC AVLELVTTKE 300 KPNFDKEMEI VCNALRAVNL STAAPPRLHP QCLSVNQRAA LAEIIDVLRA VCHAHRLPLA 360 QTWIPCCYTE RAGKEITGVR VREGKTNSDE KYILCIEETA CYVNDQMMEG FVHACLEHHL 420 DEGQGIAGKA LQSNHPFFFP DVKTYDISEY PLVHHARKFG LNAAVSIRLR STYTGDADYI 480 LEFFLPVSMK GSLEQQLLLN NLSGTMQRIC KSLRTVSDRE LAGGEGSNVA FQMGAVQKFT 540 PMTMSKRNSQ ATSSDSDVNS TKKLPEKIHQ KVSDARNDGI EADSPHEQAR SGSRRQEKKR 600 NTAEKNVSLN VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLRK 660 IQTVLDSVQG VEGGLKFDPT TGEFVASGST TQESDSQKGL LFQDTDMCVK NAMPATQNAV 720 SVPSTPGVSS LIKPEVDDCS MGNQVGPSSE LAINACEGEL DKPSVSWLDC SEDSNIAAID 780 AVSCRLASLE TAPPTSSENA TLGSYLVDRG EKWGLKRGSL KLVDSDSHFA PRSSISLAAA 840 NEMHTGVGGD AGIVEHNQPT SSSLTDSSDG SLSMMHGSSS SSQSFEEQKH SKVKTSCVDG 900 GSKITVKATY REDTIRFKFE PSAGFFQLYE EVAKRFKLQN GIFQLKYLDD EEEWVMLESD 960 ADLQECLEIL DDIGTHNVKF LVRDVPCTIS SSGSSNCFLN GGSYILTNLS TLQRDSFLYN 1020 L

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence Send to blast

MDYPLFSKEK GTGFWASSKV QMENLLSFDG TRNLNSEENF TELMNFDTYA GWCNSPGAAD  60
QIFTSYGLSS SASMPHGASL DALNFTEQNT GAFPVNESHG NFNPMENSFN SGDKTMFQQM  120
DTRYGFSMDS NDTNDVAAAQ NTGSFQQNNA LNIENYIIPR PFSWSVDEKM LRALSLFKES  180
SGGGILAQVW VPMRLGDHYV LSTSEQPYLL DQMLAGYREV SRLFTFSAER GSDSFLGLPG  240
RVFISKVPEW TSNVRYYNKI EYLRVDHAAN HEVRGSIALP VFDSHSMSCC AVLELVTTKE  300
KPNFDKEMEI VCNALRAVNL STAAPPRLHP QCLSVNQRAA LAEIIDVLRA VCHAHRLPLA  360
QTWIPCCYTE RAGKEITGVR VREGKTNSDE KYILCIEETA CYVNDQMMEG FVHACLEHHL  420
DEGQGIAGKA LQSNHPFFFP DVKTYDISEY PLVHHARKFG LNAAVSIRLR STYTGDADYI  480
LEFFLPVSMK GSLEQQLLLN NLSGTMQRIC KSLRTVSDRE LAGGEGSNVA FQMGAVQKFT  540
PMTMSKRNSQ ATSSDSDVNS TKKLPEKIHQ KVSDARNDGI EADSPHEQAR SGSRRQEKKR  600
NTAEKNVSLN VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLRK  660
IQTVLDSVQG VEGGLKFDPT TGEFVASGST TQESDSQKGL LFQDTDMCVK NAMPATQNAV  720
SVPSTPGVSS LIKPEVDDCS MGNQVGPSSE LAINACEGEL DKPSVSWLDC SEDSNIAAID  780
AVSCRLASLE TAPPTSSENA TLGSYLVDRG EKWGLKRGSL KLVDSDSHFA PRSSISLAAA  840
NEMHTGVGGD AGIVEHNQPT SSSLTDSSDG SLSMMHGSSS SSQSFEEQKH SKVKTSCVDG  900
GSKITVKATY REDTIRFKFE PSAGFFQLYE EVAKRFKLQN GIFQLKYLDD EEEWVMLESD  960
ADLQECLEIL DDIGTHNVKF LVRDVPCTIS SSGSSNCFLN GGSYILTNLS TLQRDSFLYN  1020
L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806720.1	0.0	PREDICTED: protein NLP9 isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2I4DHU7	0.0	A0A2I4DHU7_JUGRE; protein NLP9 isoform X2
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]