PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006379-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 385aa    MW: 42522.3 Da    PI: 6.374
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006379-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.5e-27201261259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqKe+ gs+fprsYYrCt++   +Cp+kk+v+r ++dp + e++Y+g+H+++
  WALNUT_00006379-RA 201 EDDFTWRKYGQKEILGSRFPRSYYRCTHQklyQCPAKKQVQRFDDDPYTYEVIYRGDHTCH 261
                         79***************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-26196262IPR003657WRKY domain
SuperFamilySSF1182901.03E-24198262IPR003657WRKY domain
SMARTSM007741.2E-33200262IPR003657WRKY domain
PfamPF031066.1E-25201261IPR003657WRKY domain
PROSITE profilePS5081119.302201263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEEIVSLILL GCKLARELES NLPNLADQPN LLSKSCDEVI KVFRTAKERL YKTQGSTSTS  60
AHPGHMMTLF HEPQDSLVQQ PRIEFASLQQ WLRSSCTQAM DNIIQMQLLQ ADHQRISPSV  120
DMQDSGSKVI NVAGLCTGGS DRVEGSAPSR SIGGELHPLH ASESGIASSS QRQRRRKDDG  180
ERRTVIKVAA PRVGNTEIPP EDDFTWRKYG QKEILGSRFP RSYYRCTHQK LYQCPAKKQV  240
QRFDDDPYTY EVIYRGDHTC HMSSTAPSLP PPPPVDITDH NDHEMAQIIN IQPPQDSSSV  300
PSSRSWLSTE YFSLRTGGGT IVGGGAGPST TRSGKELVAV EYPVTDLADA MFNSGSSSSN  360
SIDFLFHSNE LNRGQQGDNG NNTVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-18201260968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821747.10.0PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A2I4EQS40.0A0A2I4EQS4_JUGRE; WRKY transcription factor 55-like
STRINGPOPTR_0013s09460.12e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-52WRKY DNA-binding protein 55