PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006229-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 312aa    MW: 34650.9 Da    PI: 8.6966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006229-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.82.2e-33153210259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp +v++tYeg+H+h+
  WALNUT_00006229-RA 153 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFTDPGTVVTTYEGQHTHP 210
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381309.7E-1131312IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.806.8E-34137212IPR003657WRKY domain
SuperFamilySSF1182906.15E-29144212IPR003657WRKY domain
PROSITE profilePS5081131.858147212IPR003657WRKY domain
SMARTSM007743.0E-39152211IPR003657WRKY domain
PfamPF031067.8E-26153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKKKEVIKME ETFGSSLFAE HISDGFPFSG IFDFSEGEKS SLGFMELLGI QDCSTPSLFD  60
LPQAPSMASS APRPVTTVKE GSEVLNQPAT PNSSTISSAS SEAVNDEQTK AVDQEEEQQE  120
KTKKQLKPKK TNQKRQREPR FAFVTKSEVD QLEDGYRWRK YGQKAVKNSP FPRSYYRCTT  180
ASCNVKKRVE RSFTDPGTVV TTYEGQHTHP SPVMPRQSLA GAPPGPGISV GCATNFAMPM  240
SRTSTLSQYQ QQRQQSFIMN TLSPSTYGTH HHGLTNTPGL RRDIRFCTPG SALLRDNGLL  300
QDIVPSHMLK EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-281452121077Probable WRKY transcription factor 4
2lex_A1e-281452121077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824247.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-70WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2I4EXY30.0A0A2I4EXY3_JUGRE; WRKY transcription factor
STRINGcassava4.1_012593m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-60WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]