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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00006193-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19090.3 Da PI: 7.5578 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55 | 2.1e-17 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g WALNUT_00006193-RA 25 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 74 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 25 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-37 | 25 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-11 | 26 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-26 | 26 | 83 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-20 | 26 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-11 | 64 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEGGGGGGER EENRRKRGVE MCERPYKGIR MRKWGKWVAE IREPNKRSRI WLGSYSTPVA 60 AARAYDTAVF YLRGPSARLN FPEFLAGEAL CGDMSAASIR KKATEVGAQV DAVETALHHQ 120 PQQHRDHHAS AAAAAAAAVA AAVTSEFNSC GGFVERVDLN KLPDPDYSDG EWEGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 17 | 82 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824218.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
Swissprot | Q9FH94 | 3e-64 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A2I4EXU5 | 1e-126 | A0A2I4EXU5_JUGRE; ethylene-responsive transcription factor ERF010-like | ||||
STRING | EMJ07233 | 2e-67 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 3e-64 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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