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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005774-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21239.4 Da PI: 10.0002 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45 | 1.4e-14 | 22 | 58 | 11 | 47 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 v+fskRr g++KKA+EL++L +e a iifs+ gk++ WALNUT_00005774-RA 22 VSFSKRRSGLFKKASELCTLRVVETANIIFSPGGKVF 58 9*********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-13 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.488 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-15 | 4 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-7 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-14 | 22 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-7 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-7 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MMNMGWKKTQ KKMTQGANAP LVSFSKRRSG LFKKASELCT LRVVETANII FSPGGKVFSS 60 GHPSAEDVIN MLGHRGKPDA ATLLEAEAHQ ERVRRDLKKQ YSDLLRQLEA EKKRGEKLEQ 120 MRMEYQGCSW FYAPIDELSL EELKVKSAAM AELKGKVLKE LEERLAQGSA PSVAANSGGS 180 SVFPVNDPKT AP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018829546.1 | 1e-140 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
Refseq | XP_018829549.1 | 1e-140 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2I4FD26 | 1e-139 | A0A2I4FD26_JUGRE; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_002531994.1 | 8e-45 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16391 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-26 | AGAMOUS-like 62 |