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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00005578-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17890.5 Da PI: 8.8466 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 20 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ ng +r +lg+f+taeeAa+a+++a+ ++g+ WALNUT_00005578-RA 20 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFDTAEEAARAYDRAAFHFRGH 71 69*******.**********98887..***********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.97E-28 | 19 | 79 | No hit | No description |
PROSITE profile | PS51032 | 25.027 | 20 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 20 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-35 | 20 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-23 | 20 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-13 | 20 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEAGKKRAGN INEKSEREAR YRGIRRRPWG KFAAEIRDPT RNGARLWLGT FDTAEEAARA 60 YDRAAFHFRG HLAILNFPNE YQYYNQNQGS SFSTSSGTSF PASSSAAHAG TSSSFGQLGA 120 SASSTNGVQE GEQLIELQYF DSKLLEQLLE TAEDRPGQGR TT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-29 | 20 | 81 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018827143.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 1e-40 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2I4F670 | 1e-114 | A0A2I4F670_JUGRE; ethylene-responsive transcription factor ERF098-like | ||||
STRING | XP_008235691.1 | 8e-48 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-23 | ERF family protein |
Publications ? help Back to Top | |||
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